JAL-1705 EnsemblGene added, and related refactoring

[jalview.git] / src / jalview / ext / ensembl / EnsemblOverlap.java

diff --git a/src/jalview/ext/ensembl/EnsemblOverlap.java b/src/jalview/ext/ensembl/EnsemblOverlap.java
index 2ec4664..1663d0d 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblOverlap.java
+++ b/src/jalview/ext/ensembl/EnsemblOverlap.java
@@ -83,7 +83,7 @@ public class EnsemblOverlap extends EnsemblRestClient
   }
 
   @Override
-  public boolean useGetRequest()
+  protected boolean useGetRequest()
   {
     return true;
   }
@@ -93,7 +93,7 @@ public class EnsemblOverlap extends EnsemblRestClient
    * describes the required encoding of the response.
    */
   @Override
-  public String getRequestMimeType()
+  protected String getRequestMimeType()
   {
     return "text/x-gff3";
   }
@@ -102,7 +102,7 @@ public class EnsemblOverlap extends EnsemblRestClient
    * Returns the MIME type for GFF3.
    */
   @Override
-  public String getResponseMimeType()
+  protected String getResponseMimeType()
   {
     return "text/x-gff3";
   }
@@ -116,9 +116,8 @@ public class EnsemblOverlap extends EnsemblRestClient
    * @return
    * @throws IOException
    */
-  public AlignmentI getSequenceRecords(String accId,
-          EnsemblFeatureType[] features)
-          throws IOException
+  protected AlignmentI getSequenceRecords(String accId,
+          EnsemblFeatureType[] features) throws IOException
   {
     featuresWanted = features;
     return getSequenceRecords(accId);