JAL-4090 JAL-1551 spotlessApply

[jalview.git] / src / jalview / ext / ensembl / EnsemblSeqProxy.java

diff --git a/src/jalview/ext/ensembl/EnsemblSeqProxy.java b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
index 949c52e..ff394e8 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblSeqProxy.java
+++ b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
@@ -270,7 +270,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
               .getSequenceRecords(accId);
       if (protein == null || protein.getHeight() == 0)
       {
-        jalview.bin.Console.outPrintln("No protein product found for " + accId);
+        jalview.bin.Console
+                .outPrintln("No protein product found for " + accId);
         return;
       }
       SequenceI proteinSeq = protein.getSequenceAt(0);
@@ -382,7 +383,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
       seq.addDBRef(xrefs.get(i));
     }
 
-    // jalview.bin.Console.outPrintln("primaries are " + seq.getPrimaryDBRefs().toString());
+    // jalview.bin.Console.outPrintln("primaries are " +
+    // seq.getPrimaryDBRefs().toString());
     /*
      * and add a reference to itself
      */
@@ -508,7 +510,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
       result.add(sequence);
     } catch (ParseException | IOException e)
     {
-      jalview.bin.Console.errPrintln("Error processing JSON response: " + e.toString());
+      jalview.bin.Console.errPrintln(
+              "Error processing JSON response: " + e.toString());
       // ignore
     }
     // Platform.timeCheck("ENS seqproxy2", Platform.TIME_MARK);
@@ -659,8 +662,9 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
 
     if (regions.isEmpty())
     {
-      jalview.bin.Console.outPrintln("Failed to identify target sequence for " + accId
-              + " from genomic features");
+      jalview.bin.Console
+              .outPrintln("Failed to identify target sequence for " + accId
+                      + " from genomic features");
       return null;
     }
 
@@ -829,7 +833,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
 
     boolean result = transferFeatures(sfs, targetSequence, mapping,
             accessionId);
-    // jalview.bin.Console.outPrintln("transferFeatures (" + (sfs.size()) + " --> "
+    // jalview.bin.Console.outPrintln("transferFeatures (" + (sfs.size()) + "
+    // --> "
     // + targetSequence.getFeatures().getFeatureCount(true) + ") to "
     // + targetSequence.getName() + " took "
     // + (System.currentTimeMillis() - start) + "ms");