Merge branch 'bug/JAL-3099alignmentVisibleWidth' into merge/JAL-3099

[jalview.git] / src / jalview / ext / ensembl / EnsemblSequenceFetcher.java

diff --git a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java
index f16dda6..4da0e3c 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java
+++ b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java
@@ -20,6 +20,7 @@
  */
 package jalview.ext.ensembl;
 
+import jalview.analysis.AlignmentUtils;
 import jalview.bin.Cache;
 import jalview.datamodel.DBRefSource;
 import jalview.ws.seqfetcher.DbSourceProxyImpl;
@@ -39,9 +40,9 @@ abstract class EnsemblSequenceFetcher extends DbSourceProxyImpl
   protected static final String ENSEMBL_GENOMES_BASEURL = "ENSEMBL_GENOMES_BASEURL";
 
   // domain properties default values:
-  protected static final String DEFAULT_ENSEMBL_BASEURL = "http://rest.ensembl.org";
+  protected static final String DEFAULT_ENSEMBL_BASEURL = "https://rest.ensembl.org";
 
-  protected static final String DEFAULT_ENSEMBL_GENOMES_BASEURL = "http://rest.ensemblgenomes.org";
+  protected static final String DEFAULT_ENSEMBL_GENOMES_BASEURL = "https://rest.ensemblgenomes.org";
 
   /*
    * accepts ENSG/T/E/P with 11 digits
@@ -56,6 +57,18 @@ abstract class EnsemblSequenceFetcher extends DbSourceProxyImpl
 
   protected final String ensemblDomain;
 
+  protected static final String OBJECT_TYPE_TRANSLATION = "Translation";
+
+  protected static final String OBJECT_TYPE_TRANSCRIPT = "Transcript";
+
+  protected static final String OBJECT_TYPE_GENE = "Gene";
+
+  protected static final String PARENT = "Parent";
+
+  protected static final String JSON_ID = AlignmentUtils.VARIANT_ID; // "id";
+
+  protected static final String OBJECT_TYPE = "object_type";
+
   /*
    * possible values for the 'feature' parameter of the /overlap REST service
    * @see http://rest.ensembl.org/documentation/info/overlap_id