JAL-1705 include stop codons in derived CDS; support ensemblgenomes

[jalview.git] / src / jalview / ext / ensembl / EnsemblXref.java

diff --git a/src/jalview/ext/ensembl/EnsemblXref.java b/src/jalview/ext/ensembl/EnsemblXref.java
index 514e44a..f19b4d4 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblXref.java
+++ b/src/jalview/ext/ensembl/EnsemblXref.java
@@ -27,6 +27,16 @@ import org.json.simple.parser.ParseException;
 class EnsemblXref extends EnsemblRestClient
 {
 
+  /**
+   * Constructor given the target domain to fetch data from
+   * 
+   * @param d
+   */
+  public EnsemblXref(String d)
+  {
+    super(d);
+  }
+
   @Override
   public String getDbName()
   {
@@ -164,7 +174,7 @@ class EnsemblXref extends EnsemblRestClient
    */
   protected URL getUrl(String identifier)
   {
-    String url = ENSEMBL_REST + "/xrefs/id/" + identifier
+    String url = getDomain() + "/xrefs/id/" + identifier
             + "?content-type=application/json&all_levels=1";
     try
     {