develop merge

[jalview.git] / src / jalview / ext / ensembl / Species.java

diff --git a/src/jalview/ext/ensembl/Species.java b/src/jalview/ext/ensembl/Species.java
new file mode 100644 (file)
index 0000000..d8a00a5
--- /dev/null
+++ b/src/jalview/ext/ensembl/Species.java
@@ -0,0 +1,32 @@
+package jalview.ext.ensembl;
+
+/**
+ * Selected species identifiers used by Ensembl
+ * 
+ * @author gmcarstairs
+ * @see http://rest.ensembl.org/info/species?content-type=text/xml
+ */
+enum Species
+{
+  /*
+   * using any suitably readable alias as the enum name; these are all
+   * valid species parameters to Ensembl REST services where applicable
+   */
+  human(true), mouse(true), s_cerevisiae(true), cow(false), pig(false),
+  rat(true), celegans(true), sheep(false), horse(false), gorilla(false),
+  rabbit(false), gibbon(false), dog(false), orangutan(false),
+  xenopus(true), chimpanzee(false), cat(false), zebrafish(true), chicken(
+          true), dmelanogaster(true);
+
+  boolean modelOrganism;
+
+  private Species(boolean model)
+  {
+    this.modelOrganism = model;
+  }
+
+  boolean isModelOrganism()
+  {
+    return modelOrganism;
+  }
+}