JAL-629 improvements to argparser toString. Improvements to cli paeFile structure...

[jalview.git] / src / jalview / ext / jmol / JmolParser.java

diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java
index f0e477c..a276fb6 100644 (file)
--- a/src/jalview/ext/jmol/JmolParser.java
+++ b/src/jalview/ext/jmol/JmolParser.java
@@ -305,7 +305,7 @@ public class JmolParser extends StructureFile implements JmolStatusListener
       {
         Alignment al = new Alignment(prot.toArray(new SequenceI[0]));
         EBIAlfaFold.addAlphaFoldPAE(al, new File(this.getPAEMatrix()), 0,
-                null, false, false);
+                null, false, false, null);
 
         if (al.getAlignmentAnnotation() != null)
         {