Merge branch 'develop' into JAL-1483_29dev

[jalview.git] / src / jalview / ext / rbvi / chimera / JalviewChimeraBinding.java

diff --git a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
index 82f5e5c..b5bfbaa 100644 (file)
--- a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
+++ b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
@@ -58,6 +58,9 @@ public abstract class JalviewChimeraBinding extends
         SequenceStructureBinding, StructureSelectionManagerProvider
 
 {
+
+  private static final boolean debug = false;
+
   private static final String PHOSPHORUS = "P";
 
   private static final String ALPHACARBON = "CA";
@@ -654,10 +657,12 @@ public abstract class JalviewChimeraBinding extends
       }
       if (selectioncom.length() > 0)
       {
-        // TODO remove debug output
-        System.out.println("Select regions:\n" + selectioncom.toString());
-        System.out
-                .println("Superimpose command(s):\n" + command.toString());
+        if (debug)
+        {
+          System.out.println("Select regions:\n" + selectioncom.toString());
+          System.out.println("Superimpose command(s):\n"
+                  + command.toString());
+        }
         allComs.append("~display all; chain @CA|P; ribbon "
                 + selectioncom.toString() + ";"+command.toString());
         // selcom.append("; ribbons; ");
@@ -669,7 +674,10 @@ public abstract class JalviewChimeraBinding extends
       {
         selectioncom.setLength(selectioncom.length() - 1);
       }
-      System.out.println("Select regions:\n" + selectioncom.toString());
+      if (debug)
+      {
+        System.out.println("Select regions:\n" + selectioncom.toString());
+      }
       allComs.append("; ~display all; chain @CA|P; ribbon "
               + selectioncom.toString() + "; focus");
       // evalStateCommand("select *; backbone; select "+selcom.toString()+"; cartoons; center "+selcom.toString());
@@ -954,8 +962,6 @@ public abstract class JalviewChimeraBinding extends
     }
   }
 
-  boolean debug = false;
-
   private void log(String message)
   {
     System.err.println("## Chimera log: " + message);