JAL-892 JAL-1779 save/restore Varna viewer to/from project

[jalview.git] / src / jalview / ext / varna / RnaModel.java

diff --git a/src/jalview/ext/varna/RnaModel.java b/src/jalview/ext/varna/RnaModel.java
new file mode 100644 (file)
index 0000000..44c6cf6
--- /dev/null
+++ b/src/jalview/ext/varna/RnaModel.java
@@ -0,0 +1,37 @@
+package jalview.ext.varna;
+
+import fr.orsay.lri.varna.models.rna.RNA;
+
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.SequenceI;
+
+/**
+ * Data bean wrapping the data items that define one RNA view
+ */
+public class RnaModel
+{
+  public final String title;
+
+  public final AlignmentAnnotation ann;
+
+  public final SequenceI seq;
+
+  public final boolean gapped;
+
+  public final RNA rna;
+
+  // path to a file holding VARNA session state XML
+  public final String varnaSession;
+
+  public RnaModel(String t, AlignmentAnnotation aa, SequenceI s, RNA r,
+          boolean g,
+          String sessionFile)
+  {
+    title = t;
+    ann = aa;
+    seq = s;
+    gapped = g;
+    rna = r;
+    varnaSession = sessionFile;
+  }
+}
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