Merge branch 'develop' into feature/r2_11_2/JAL-3808_gff2_exonerate

[jalview.git] / src / jalview / fts / core / FTSRestClient.java

diff --git a/src/jalview/fts/core/FTSRestClient.java b/src/jalview/fts/core/FTSRestClient.java
index 7a8a695..0bca070 100644 (file)
--- a/src/jalview/fts/core/FTSRestClient.java
+++ b/src/jalview/fts/core/FTSRestClient.java
@@ -20,16 +20,21 @@
  */
 package jalview.fts.core;
 
+import java.util.Locale;
+
 import java.io.BufferedReader;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.InputStreamReader;
 import java.util.ArrayList;
 import java.util.Collection;
+import java.util.HashMap;
 import java.util.Objects;
 
 import jalview.fts.api.FTSDataColumnI;
 import jalview.fts.api.FTSDataColumnI.FTSDataColumnGroupI;
+import jalview.fts.core.FTSDataColumnPreferences.PreferenceSource;
+import jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient;
 import jalview.fts.api.FTSRestClientI;
 
 /**
@@ -56,6 +61,8 @@ public abstract class FTSRestClient implements FTSRestClientI
 
   private int defaultResponsePageSize = 100;
 
+  protected HashMap<String,String> mockQueries = null;
+
   protected FTSRestClient()
   {
 
@@ -166,7 +173,7 @@ public abstract class FTSRestClient implements FTSRestClientI
               public DataTypeI getDataType()
               {
                 final String[] dataTypeString = lineData[2].split("\\|");
-                final String classString = dataTypeString[0].toUpperCase();
+                final String classString = dataTypeString[0].toUpperCase(Locale.ROOT);
 
                 return new DataTypeI()
                 {
@@ -177,7 +184,7 @@ public abstract class FTSRestClient implements FTSRestClientI
                     if (dataTypeString.length > 1
                             && dataTypeString[1] != null)
                     {
-                      switch (dataTypeString[1].toUpperCase())
+                      switch (dataTypeString[1].toUpperCase(Locale.ROOT))
                       {
                       case "T":
                       case "TRUE":
@@ -427,6 +434,16 @@ public abstract class FTSRestClient implements FTSRestClientI
             "Couldn't find data column with name : " + nameOrCode);
   }
 
+  /**
+   * 
+   * @param instance
+   * @param mocks {{working query, working response}, ...}
+   */
+  public static void createMockFTSRestClient(FTSRestClient instance,String[][] mocks)
+  {
+    instance.setMock(mocks);
+  }
+
   @Override
   public FTSDataColumnGroupI getDataColumnGroupById(String id)
           throws Exception
@@ -480,6 +497,11 @@ public abstract class FTSRestClient implements FTSRestClientI
     return String.valueOf(code) + " " + message;
   }
 
+  public static void unMock(FTSRestClient instance)
+  {
+    instance.mockQueries=null;
+  }
+
   protected String getResourceFile(String fileName)
   {
     String result = "";
@@ -504,4 +526,37 @@ public abstract class FTSRestClient implements FTSRestClientI
     return defaultResponsePageSize;
   }
 
+  protected void setMock(String[][] mocks)
+  {
+    if (mocks==null) {
+      mockQueries=null;
+      return;
+    }
+    mockQueries=new HashMap<String,String>();
+    for (String[] mock:mocks)
+    {
+      mockQueries.put(mock[0],mock[1]);
+    }
+  }
+
+  protected boolean isMocked()
+  {
+    return mockQueries!=null;
+  }
+
+  @Override
+  public String[] getPreferencesColumnsFor(PreferenceSource source)
+  {
+    String[] columnNames = null;
+    switch (source)
+    {
+    case SEARCH_SUMMARY:
+      columnNames = new String[] { "", "Display", "Group" };
+      break;
+    default:
+      // non structure sources don't return any other kind of preferences columns
+      break;
+    }
+    return columnNames;
+  }
 }