JAL-2446 merged to spike branch

[jalview.git] / src / jalview / fts / service / pdb / PDBFTSPanel.java

diff --git a/src/jalview/fts/service/pdb/PDBFTSPanel.java b/src/jalview/fts/service/pdb/PDBFTSPanel.java
index 826a505..b944b9b 100644 (file)
--- a/src/jalview/fts/service/pdb/PDBFTSPanel.java
+++ b/src/jalview/fts/service/pdb/PDBFTSPanel.java
@@ -29,7 +29,9 @@ import jalview.fts.core.GFTSPanel;
 import jalview.gui.SequenceFetcher;
 import jalview.util.MessageManager;
 
+import java.util.HashMap;
 import java.util.HashSet;
+import java.util.Map;
 
 @SuppressWarnings("serial")
 public class PDBFTSPanel extends GFTSPanel
@@ -37,25 +39,33 @@ public class PDBFTSPanel extends GFTSPanel
   private static String defaultFTSFrameTitle = MessageManager
           .getString("label.pdb_sequence_fetcher");
 
-  private String ftsFrameTitle = defaultFTSFrameTitle;
+
+  private static Map<String, Integer> tempUserPrefs = new HashMap<String, Integer>();
+
+  private static final String PDB_FTS_CACHE_KEY = "CACHE.PDB_FTS";
 
   public PDBFTSPanel(SequenceFetcher seqFetcher)
   {
+    super();
+    pageLimit = PDBFTSRestClient.getInstance().getDefaultResponsePageSize();
     this.seqFetcher = seqFetcher;
-    this.progressIdicator = (seqFetcher == null) ? null : seqFetcher
+    this.progressIndicator = (seqFetcher == null) ? null : seqFetcher
             .getProgressIndicator();
   }
 
-
   @Override
-  public void searchAction()
+  public void searchAction(boolean isFreshSearch)
   {
+    mainFrame.requestFocusInWindow();
+    if (isFreshSearch)
+    {
+      offSet = 0;
+    }
     new Thread()
     {
       @Override
       public void run()
       {
-        ftsFrameTitle = defaultFTSFrameTitle;
         reset();
         boolean allowEmptySequence = false;
         if (getTypedText().length() > 0)
@@ -66,8 +76,8 @@ public class PDBFTSPanel extends GFTSPanel
           String searchTarget = ((FTSDataColumnI) cmb_searchTarget
                   .getSelectedItem()).getCode();
           wantedFields = PDBFTSRestClient.getInstance()
-                  .getAllDefaulDisplayedDataColumns();
-          String searchTerm = decodeSearchTerm(txt_search.getText(),
+                  .getAllDefaultDisplayedFTSDataColumns();
+          String searchTerm = decodeSearchTerm(getTypedText(),
                   searchTarget);
 
           FTSRestRequest request = new FTSRestRequest();
@@ -75,6 +85,7 @@ public class PDBFTSPanel extends GFTSPanel
           request.setResponseSize(100);
           request.setFieldToSearchBy("(" + searchTarget + ":");
           request.setSearchTerm(searchTerm + ")");
+          request.setOffSet(offSet);
           request.setWantedFields(wantedFields);
           FTSRestClientI pdbRestCleint = PDBFTSRestClient.getInstance();
           FTSRestResponse resultList;
@@ -93,22 +104,47 @@ public class PDBFTSPanel extends GFTSPanel
           {
             getResultTable().setModel(
                     FTSRestResponse.getTableModel(request,
-                    resultList.getSearchSummary()));
+                            resultList.getSearchSummary()));
             FTSRestResponse.configureTableColumn(getResultTable(),
-                    wantedFields);
+                    wantedFields, tempUserPrefs);
             getResultTable().setVisible(true);
           }
 
           long endTime = System.currentTimeMillis();
-          int resultSetCount = resultList.getNumberOfItemsFound();
-          String result = (resultSetCount > 1) ? MessageManager
+          totalResultSetCount = resultList.getNumberOfItemsFound();
+          resultSetCount = resultList.getSearchSummary() == null ? 0
+                  : resultList.getSearchSummary().size();
+          String result = (resultSetCount > 0) ? MessageManager
                   .getString("label.results") : MessageManager
                   .getString("label.result");
-          updateSearchFrameTitle(defaultFTSFrameTitle + " - "
-                  + resultSetCount + " " + result + " ("
-                  + (endTime - startTime) + " milli secs)");
+
+          if (isPaginationEnabled() && resultSetCount > 0)
+          {
+            updateSearchFrameTitle(defaultFTSFrameTitle
+                    + " - "
+                    + result
+                    + " "
+                    + totalNumberformatter.format((Number) (offSet + 1))
+                    + " to "
+                    + totalNumberformatter
+                            .format((Number) (offSet + resultSetCount))
+                    + " of "
+                    + totalNumberformatter
+                            .format((Number) totalResultSetCount) + " "
+                    + " (" + (endTime - startTime) + " milli secs)");
+          }
+          else
+          {
+            updateSearchFrameTitle(defaultFTSFrameTitle + " - "
+                    + resultSetCount + " " + result + " ("
+                    + (endTime - startTime) + " milli secs)");
+          }
+
           setSearchInProgress(false);
+          refreshPaginatorState();
+          updateSummaryTableSelections();
         }
+        txt_search.updateCache();
       }
     }.start();
   }
@@ -160,20 +196,22 @@ public class PDBFTSPanel extends GFTSPanel
     try
     {
       primaryKeyColIndex = getFTSRestClient().getPrimaryKeyColumIndex(
-              wantedFields,
-              false);
+              wantedFields, false);
     } catch (Exception e)
     {
-      // TODO Auto-generated catch block
       e.printStackTrace();
     }
     int[] selectedRows = getResultTable().getSelectedRows();
+    String searchTerm = getTypedText();
     for (int summaryRow : selectedRows)
     {
       String idStr = getResultTable().getValueAt(summaryRow,
-              primaryKeyColIndex)
-              .toString();
-      String searchTerm = txt_search.getText();
+              primaryKeyColIndex).toString();
+      selectedIdsSet.add(getPDBIdwithSpecifiedChain(idStr, searchTerm));
+    }
+
+    for (String idStr : paginatorCart)
+    {
       selectedIdsSet.add(getPDBIdwithSpecifiedChain(idStr, searchTerm));
     }
 
@@ -190,7 +228,6 @@ public class PDBFTSPanel extends GFTSPanel
     delayAndEnableActionButtons();
   }
 
-
   public static String getPDBIdwithSpecifiedChain(String pdbId,
           String searchTerm)
   {
@@ -217,8 +254,6 @@ public class PDBFTSPanel extends GFTSPanel
     return pdbIdWithChainCode;
   }
 
-
-
   @Override
   public FTSRestClientI getFTSRestClient()
   {
@@ -228,7 +263,26 @@ public class PDBFTSPanel extends GFTSPanel
   @Override
   public String getFTSFrameTitle()
   {
-    return ftsFrameTitle;
+    return defaultFTSFrameTitle;
+  }
+
+  @Override
+  public boolean isPaginationEnabled()
+  {
+    return true;
+  }
+
+  @Override
+  public Map<String, Integer> getTempUserPrefs()
+  {
+    return tempUserPrefs;
+  }
+
+
+  @Override
+  public String getCacheKey()
+  {
+    return PDB_FTS_CACHE_KEY;
   }