test HMM annotaTION

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index a91bb66..334d380 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -4653,7 +4653,12 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           }
           else if (FileFormat.HMMER3.equals(format))
           {
-            HMMFile hmmFile = new HMMFile(new FileParse(file, sourceType));
+            HMMFile hmmFile = new HMMFile(new FileParse(file, sourceType)); // TODO
+                                                                            // need
+                                                                            // to
+                                                                            // follow
+                                                                            // standard
+                                                                            // pipeline
             hmmFile.parse();
             HiddenMarkovModel hmm = hmmFile.getHMM();
             AlignmentAnnotation annotation = hmm.createAnnotation(