Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip-file-support

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index e6b7af4..c3d80d1 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -819,8 +819,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   {
     if (progressBarHandlers == null || !progressBars.contains(new Long(id)))
     {
-      throw new Error(
-              "call setProgressBar before registering the progress bar's handler.");
+      throw new Error(MessageManager.getString("error.call_setprogressbar_before_registering_handler"));
     }
     progressBarHandlers.put(new Long(id), handler);
     final JPanel progressPanel = (JPanel) progressBars.get(new Long(id));
@@ -836,10 +835,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
         public void actionPerformed(ActionEvent e)
         {
           handler.cancelActivity(id);
-          us.setProgressBar(
-                  "Cancelled "
-                          + ((JLabel) progressPanel.getComponent(0))
-                                  .getText(), id);
+          us.setProgressBar(MessageManager.formatMessage("label.cancelled_params", new String[]{((JLabel) progressPanel.getComponent(0)).getText()}), id);
         }
       });
       progressPanel.add(cancel, BorderLayout.EAST);
@@ -1002,7 +998,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
             currentFileFormat, false);
 
     chooser.setFileView(new JalviewFileView());
-    chooser.setDialogTitle("Save Alignment to file");
+    chooser.setDialogTitle(MessageManager.getString("label.save_alignment_to_file"));
     chooser.setToolTipText(MessageManager.getString("action.save"));
 
     int value = chooser.showSaveDialog(this);
@@ -1947,7 +1943,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
         // /////
         // ADD HISTORY ITEM
         //
-        addHistoryItem(new EditCommand("Add sequences", EditCommand.PASTE,
+        addHistoryItem(new EditCommand(MessageManager.getString("label.add_sequences"), EditCommand.PASTE,
                 sequences, 0, alignment.getWidth(), alignment));
       }
       // Add any annotations attached to sequences
@@ -2206,7 +2202,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     /*
      * //ADD HISTORY ITEM
      */
-    addHistoryItem(new EditCommand("Cut Sequences", EditCommand.CUT, cut,
+    addHistoryItem(new EditCommand(MessageManager.getString("label.cut_sequences"), EditCommand.CUT, cut,
             sg.getStartRes(), sg.getEndRes() - sg.getStartRes() + 1,
             viewport.getAlignment()));
 
@@ -2610,7 +2606,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     boolean addFirstIndex = false;
     if (viewTitle == null || viewTitle.trim().length() == 0)
     {
-      viewTitle = "View";
+      viewTitle = MessageManager.getString("action.view");
       addFirstIndex = true;
     }
     else
@@ -3888,7 +3884,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   public void addSortByOrderMenuItem(String title,
           final AlignmentOrder order)
   {
-    final JMenuItem item = new JMenuItem("by " + title);
+    final JMenuItem item = new JMenuItem(MessageManager.formatMessage("action.by_title_param", new String[]{title}));
     sort.add(item);
     item.addActionListener(new java.awt.event.ActionListener()
     {
@@ -4331,12 +4327,11 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           // object broker mechanism.
           final Vector<JMenu> wsmenu = new Vector<JMenu>();
           final IProgressIndicator af = me;
-          final JMenu msawsmenu = new JMenu("Alignment");
-          final JMenu secstrmenu = new JMenu(
-                  "Secondary Structure Prediction");
-          final JMenu seqsrchmenu = new JMenu("Sequence Database Search");
-          final JMenu analymenu = new JMenu("Analysis");
-          final JMenu dismenu = new JMenu("Protein Disorder");
+          final JMenu msawsmenu = new JMenu(MessageManager.getString("label.alignment"));
+          final JMenu secstrmenu = new JMenu(MessageManager.getString("label.secondary_structure_prediction"));
+          final JMenu seqsrchmenu = new JMenu(MessageManager.getString("label.sequence_database_search"));
+          final JMenu analymenu = new JMenu(MessageManager.getString("label.analysis"));
+          final JMenu dismenu = new JMenu(MessageManager.getString("label.protein_disorder"));
           // JAL-940 - only show secondary structure prediction services from
           // the legacy server
           if (// Cache.getDefault("SHOW_JWS1_SERVICES", true)
@@ -4603,7 +4598,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       public void run()
       {
         final long sttime = System.currentTimeMillis();
-        ths.setProgressBar("Searching for sequences from " + fsrc, sttime);
+        ths.setProgressBar(MessageManager.formatMessage("status.searching_for_sequences_from", new String[]{fsrc}), sttime);
         try
         {
           Alignment ds = ths.getViewport().getAlignment().getDataset(); // update
@@ -4657,7 +4652,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           jalview.bin.Cache.log.error("Error when finding crossreferences",
                   e);
         }
-        ths.setProgressBar("Finished searching for sequences from " + fsrc,
+        ths.setProgressBar(MessageManager.formatMessage("status.finished_searching_for_sequences_from", new String[]{fsrc}),
                 sttime);
       }
 
@@ -5416,9 +5411,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                   }
 
                 });
-                fetchr.setToolTipText("<html>"
-                        + JvSwingUtils.wrapTooltip("Retrieve from "
-                                + src.getDbName()) + "<html>");
+                fetchr.setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager.formatMessage("label.fetch_retrieve_from", new String[]{src.getDbName()})));
                 dfetch.add(fetchr);
                 comp++;
               }
@@ -5451,15 +5444,11 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                   }
                 });
 
-                fetchr.setToolTipText("<html>"
-                        + JvSwingUtils.wrapTooltip("Retrieve from all "
-                                + otherdb.size() + " sources in "
-                                + src.getDbSource() + "<br>First is :"
-                                + src.getDbName()) + "<html>");
+                fetchr.setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager.formatMessage("label.fetch_retrieve_from_all_sources", new String[]{Integer.valueOf(otherdb.size()).toString(), src.getDbSource(), src.getDbName()})));
                 dfetch.add(fetchr);
                 comp++;
                 // and then build the rest of the individual menus
-                ifetch = new JMenu("Sources from " + src.getDbSource());
+                ifetch = new JMenu(MessageManager.formatMessage("label.source_from_db_source", new String[]{src.getDbSource()}));
                 icomp = 0;
                 String imname = null;
                 int i = 0;
@@ -5472,7 +5461,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                           0, 10) + "..." : dbname;
                   if (imname == null)
                   {
-                    imname = "from '" + sname + "'";
+                    imname = MessageManager.formatMessage("label.from_msname", new String[]{sname});
                   }
                   fetchr = new JMenuItem(msname);
                   final DbSourceProxy[] dassrc =
@@ -5499,8 +5488,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
                   });
                   fetchr.setToolTipText("<html>"
-                          + JvSwingUtils.wrapTooltip("Retrieve from "
-                                  + dbname) + "</html>");
+                          + MessageManager.formatMessage("label.fetch_retrieve_from", new String[]{dbname}));
                   ifetch.add(fetchr);
                   ++i;
                   if (++icomp >= mcomp || i == (otherdb.size()))
@@ -5693,8 +5681,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     if (!viewport.getSequenceSetId().equals(
             alignmentPanel.av.getSequenceSetId()))
     {
-      throw new Error(
-              "Implementation error: cannot show a view from another alignment in an AlignFrame.");
+      throw new Error(MessageManager.getString("error.implementation_error_cannot_show_view_alignment_frame"));
     }
     if (tabbedPane != null
             & alignPanels.indexOf(alignmentPanel) != tabbedPane