JAL-1894 source formatting

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 8f9e49e..7908b0c 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -2370,26 +2370,26 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     /*
      * If the cut affects all sequences, warn, remove highlighted columns
      */
-
-    boolean isEntireAlignWidth = (((sg.getEndRes() - sg.getStartRes()) + 1) == viewport
-            .getAlignment().getWidth()) ? true : false;
-    if (sg.getSize() == viewport.getAlignment().getHeight()
-            && isEntireAlignWidth)
+    if (sg.getSize() == viewport.getAlignment().getHeight())
     {
-      int confirm = JOptionPane.showConfirmDialog(this,
-              MessageManager.getString("warn.delete_all"), // $NON-NLS-1$
-              MessageManager.getString("label.delete_all"), // $NON-NLS-1$
-              JOptionPane.OK_CANCEL_OPTION);
-
-      if (confirm == JOptionPane.CANCEL_OPTION
-              || confirm == JOptionPane.CLOSED_OPTION)
+      boolean isEntireAlignWidth = (((sg.getEndRes() - sg.getStartRes()) + 1) == viewport
+              .getAlignment().getWidth()) ? true : false;
+      if (isEntireAlignWidth)
       {
-        return;
+        int confirm = JOptionPane.showConfirmDialog(this,
+                MessageManager.getString("warn.delete_all"), // $NON-NLS-1$
+                MessageManager.getString("label.delete_all"), // $NON-NLS-1$
+                JOptionPane.OK_CANCEL_OPTION);
+
+        if (confirm == JOptionPane.CANCEL_OPTION
+                || confirm == JOptionPane.CLOSED_OPTION)
+        {
+          return;
+        }
       }
+      viewport.getColumnSelection().removeElements(sg.getStartRes(),
+              sg.getEndRes() + 1);
     }
-
-    viewport.getColumnSelection().removeElements(sg.getStartRes(),
-            sg.getEndRes() + 1);
     SequenceI[] cut = sg.getSequences()
             .toArray(new SequenceI[sg.getSize()]);
 
@@ -2415,7 +2415,6 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     }
   }
 
-
   /**
    * DOCUMENT ME!
    *