JAL-3048 response() renamed addResponse(); checkstyle warning fixes

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 6b3e5d8..f2ff1d4 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1010,9 +1010,9 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   }
 
   @Override
-  public void fetchSequence_actionPerformed(ActionEvent e)
+  public void fetchSequence_actionPerformed()
   {
-    new jalview.gui.SequenceFetcher(this);
+    new SequenceFetcher(this);
   }
 
   @Override
@@ -1472,7 +1472,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
             MessageManager.getString("label.load_jalview_annotations"));
     chooser.setToolTipText(
             MessageManager.getString("label.load_jalview_annotations"));
-    chooser.response(new RunResponse(JalviewFileChooser.APPROVE_OPTION)
+    chooser.addResponse(new RunResponse(JalviewFileChooser.APPROVE_OPTION)
     {
 
       @Override
@@ -1485,7 +1485,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
     });
 
-    chooser.openDialog(this);
+    chooser.showOpenDialog(this);
   }
 
   /**
@@ -3966,7 +3966,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     chooser.setToolTipText(
             MessageManager.getString("label.load_tree_file"));
 
-    chooser.response(new jalview.util.dialogrunner.RunResponse(
+    chooser.addResponse(new jalview.util.dialogrunner.RunResponse(
             JalviewFileChooser.APPROVE_OPTION)
     {
       @Override
@@ -3997,7 +3997,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                   JvOptionPane.WARNING_MESSAGE);
         }
       }
-    }).openDialog(this);
+    }).showOpenDialog(this);
   }
 
   public TreePanel showNewickTree(NewickFile nf, String treeTitle)
@@ -5019,22 +5019,19 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
     });
     rfetch.add(fetchr);
-    final AlignFrame me = this;
     new Thread(new Runnable()
     {
       @Override
       public void run()
       {
         final jalview.ws.SequenceFetcher sf = jalview.gui.SequenceFetcher
-                .getSequenceFetcherSingleton(me);
+                .getSequenceFetcherSingleton();
         javax.swing.SwingUtilities.invokeLater(new Runnable()
         {
           @Override
           public void run()
           {
-            String[] dbclasses = sf.getOrderedSupportedSources();
-            // sf.getDbInstances(jalview.ws.dbsources.DasSequenceSource.class);
-            // jalview.util.QuickSort.sort(otherdb, otherdb);
+            String[] dbclasses = sf.getNonAlignmentSources();
             List<DbSourceProxy> otherdb;
             JMenu dfetch = new JMenu();
             JMenu ifetch = new JMenu();
@@ -5051,12 +5048,6 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
               {
                 continue;
               }
-              // List<DbSourceProxy> dbs=otherdb;
-              // otherdb=new ArrayList<DbSourceProxy>();
-              // for (DbSourceProxy db:dbs)
-              // {
-              // if (!db.isA(DBRefSource.ALIGNMENTDB)
-              // }
               if (mname == null)
               {
                 mname = "From " + dbclass;
@@ -5706,7 +5697,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     chooser.setDialogTitle(MessageManager.getString("label.load_vcf_file"));
     chooser.setToolTipText(MessageManager.getString("label.load_vcf_file"));
     final AlignFrame us = this;
-    chooser.response(new RunResponse(JalviewFileChooser.APPROVE_OPTION)
+    chooser.addResponse(new RunResponse(JalviewFileChooser.APPROVE_OPTION)
     {
       @Override
       public void run()
@@ -5720,7 +5711,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
         }
 
       };
-    }).openDialog(null);
+    }).showOpenDialog(null);
 
   }