JAL-1690 'scale protein as cDNA' options in Preferences, FontChooser

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index e4593a3..44b4167 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -221,6 +221,9 @@ public class AlignViewport extends AlignmentViewport implements
     init();
   }
 
+  /**
+   * Apply any settings saved in user preferences
+   */
   private void applyViewProperties()
   {
     antiAlias = Cache.getDefault("ANTI_ALIAS", false);
@@ -246,7 +249,8 @@ public class AlignViewport extends AlignmentViewport implements
             SequenceAnnotationOrder.NONE.name()));
     showAutocalculatedAbove = Cache.getDefault(
             Preferences.SHOW_AUTOCALC_ABOVE, false);
-
+    viewStyle.setScaleProteinAsCdna(Cache.getDefault(
+            Preferences.SCALE_PROTEIN_TO_CDNA, false));
   }
 
   void init()