JAL-34 - quick hack to see how we can do alignment comparison for splitframes linking...

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 91dded1..a264100 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -964,6 +964,8 @@ public class AlignViewport extends AlignmentViewport
      */
     JInternalFrame splitFrame = new SplitFrame(cdnaFrame, proteinFrame);
     Desktop.addInternalFrame(splitFrame, linkedTitle, -1, -1);
+    cdnaFrame.viewport.updateConsensus(cdnaFrame.alignPanel);
+    proteinFrame.viewport.updateConsensus(proteinFrame.alignPanel);
 
     return proteinFrame.viewport.getAlignment();
   }