JAL-1780 more support for export setting for flatfile output

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 2224021..a6f7d41 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -54,6 +54,7 @@ import javax.swing.JOptionPane;
 import jalview.analysis.AlignmentUtils;
 import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
 import jalview.analysis.NJTree;
+import jalview.api.AlignExportSettingI;
 import jalview.api.AlignViewportI;
 import jalview.api.FeatureRenderer;
 import jalview.api.ViewStyleI;
@@ -100,6 +101,9 @@ public class AlignViewport extends AlignmentViewport implements
   private FeatureRenderer featureRenderer;
 
   private boolean includeHiddenRegion = true;
+
+  private AlignExportSettingI exportSettings;
+
   String viewName;
 
   /*
@@ -1053,13 +1057,13 @@ public class AlignViewport extends AlignmentViewport implements
     this.featureRenderer = featureRenderer;
   }
 
-  public boolean isIncludeHiddenRegion()
+  public AlignExportSettingI getExportSettings()
   {
-    return includeHiddenRegion;
+    return exportSettings;
   }
 
-  public void setIncludeHiddenRegion(boolean includeHiddenRegion)
+  public void setExportSettings(AlignExportSettingI exportSettings)
   {
-    this.includeHiddenRegion = includeHiddenRegion;
+    this.exportSettings = exportSettings;
   }
 }