profile visualizations are now logos

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 4acd086..fd1fa7d 100755 (executable)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -358,7 +358,7 @@ public class AlignViewport implements SelectionSource
         }
       }
       showConsensusHistogram = Cache.getDefault("SHOW_CONSENSUS_HISTOGRAM", true);
-      showConsensusProfile = Cache.getDefault("SHOW_CONSENSUS_PROFILE", false);
+      showSequenceLogo = Cache.getDefault("SHOW_CONSENSUS_LOGO", false);
       showGroupConsensus = Cache.getDefault("SHOW_GROUP_CONSENSUS", false);
       // TODO: add menu option action that nulls or creates consensus object depending on if the user wants to see the annotation or not in a specific alignment
       consensus = new AlignmentAnnotation("Consensus", "PID",
@@ -2099,7 +2099,7 @@ public class AlignViewport implements SelectionSource
   /**
    * should consensus profile be rendered by default
    */
-  public boolean showConsensusProfile = false;
+  public boolean showSequenceLogo = false;
   /**
    * should consensus histograms be rendered by default
    */
@@ -2107,16 +2107,16 @@ public class AlignViewport implements SelectionSource
   /**
    * @return the showConsensusProfile
    */
-  public boolean isShowConsensusProfile()
+  public boolean isShowSequenceLogo()
   {
-    return showConsensusProfile;
+    return showSequenceLogo;
   }
   /**
-   * @param showConsensusProfile the showConsensusProfile to set
+   * @param showSequenceLogo the new value
    */
-  public void setShowConsensusProfile(boolean showConsensusProfile)
+  public void setShowSequenceLogo(boolean showSequenceLogo)
   {
-    this.showConsensusProfile = showConsensusProfile;
+    this.showSequenceLogo = showSequenceLogo;
   }
   /**
    * @param showConsensusHistogram the showConsensusHistogram to set