Merge branch 'develop' into Jalview-JS/develop

[jalview.git] / src / jalview / gui / AlignmentPanel.java

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 9cb690f..5c2cdd0 100644 (file)
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -1065,6 +1065,8 @@ public class AlignmentPanel extends GAlignmentPanel implements
   public int printWrappedAlignment(int pageWidth, int pageHeight, int pageNumber,
           Graphics g) throws PrinterException
   {
+    getSeqPanel().seqCanvas.calculateWrappedGeometry(getWidth(),
+            getHeight());
     int annotationHeight = 0;
     if (av.isShowAnnotation())
     {
@@ -1086,6 +1088,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
 
     int resWidth = getSeqPanel().seqCanvas
             .getWrappedCanvasWidth(pageWidth - idWidth);
+    av.getRanges().setViewportStartAndWidth(0, resWidth);
 
     int totalHeight = cHeight * (maxwidth / resWidth + 1);
 
@@ -1097,8 +1100,8 @@ public class AlignmentPanel extends GAlignmentPanel implements
     /*
      * method: print the whole wrapped alignment, but with a clip region that
      * is restricted to the requested page; this supports selective print of 
-     * single  pages or ranges, (at the cost of some repeated processing in 
-     * the 'normal' case, when all pages are printed)
+     * single pages or ranges, (at the cost of repeated processing in the 
+     * 'normal' case, when all pages are printed)
      */
     g.translate(0, -pageNumber * pageHeight);
 
@@ -1372,6 +1375,12 @@ public class AlignmentPanel extends GAlignmentPanel implements
 
   }
 
+  /**
+   * Answers the height of the entire alignment in pixels, assuming it is in
+   * wrapped mode
+   * 
+   * @return
+   */
   int getWrappedHeight()
   {
     int seqPanelWidth = getSeqPanel().seqCanvas.getWidth();
@@ -1396,6 +1405,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
     int annotationHeight = 0;
     if (av.isShowAnnotation())
     {
+      hgap += SeqCanvas.SEQS_ANNOTATION_GAP;
       annotationHeight = getAnnotationPanel().adjustPanelHeight();
     }