JAL-1645 source formatting and organise imports
[jalview.git] / src / jalview / gui / AnnotationExporter.java
index df6f9eb..643d8a0 100644 (file)
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -120,8 +120,9 @@ public class AnnotationExporter extends JPanel
             jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
 
     chooser.setFileView(new JalviewFileView());
-    chooser.setDialogTitle(features ? MessageManager.getString("label.save_features_to_file")
-            : MessageManager.getString("label.save_annotation_to_file"));
+    chooser.setDialogTitle(features ? MessageManager
+            .getString("label.save_features_to_file") : MessageManager
+            .getString("label.save_annotation_to_file"));
     chooser.setToolTipText(MessageManager.getString("action.save"));
 
     int value = chooser.showSaveDialog(this);
@@ -156,13 +157,13 @@ public class AnnotationExporter extends JPanel
       {
         text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()
                 .getDataset().getSequencesArray(), ap.getFeatureRenderer()
-                .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);
+                .getDisplayedFeatureCols(), true, ap.av.isShowNPFeats());// ap.av.featuresDisplayed//);
       }
       else
       {
         text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
                 .getDataset().getSequencesArray(), ap.getFeatureRenderer()
-                .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);
+                .getDisplayedFeatureCols(), true, ap.av.isShowNPFeats()); // ap.av.featuresDisplayed);
       }
     }
     else
@@ -186,6 +187,7 @@ public class AnnotationExporter extends JPanel
     }
     return text;
   }
+
   public void toTextbox_actionPerformed(ActionEvent e)
   {
     CutAndPasteTransfer cap = new CutAndPasteTransfer();
@@ -197,23 +199,26 @@ public class AnnotationExporter extends JPanel
       Desktop.addInternalFrame(
               cap,
               (features ? MessageManager.formatMessage(
-                      "label.features_for_params", new String[]
-                      { ap.alignFrame.getTitle() }) : MessageManager
-                      .formatMessage("label.annotations_for_params",
-                              new String[]
-                              { ap.alignFrame.getTitle() })), 600, 500);
+                      "label.features_for_params",
+                      new String[] { ap.alignFrame.getTitle() })
+                      : MessageManager.formatMessage(
+                              "label.annotations_for_params",
+                              new String[] { ap.alignFrame.getTitle() })),
+              600, 500);
     } catch (OutOfMemoryError oom)
     {
       new OOMWarning((features ? MessageManager.formatMessage(
-              "label.generating_features_for_params", new String[]
-              { ap.alignFrame.getTitle() }) : MessageManager.formatMessage(
-              "label.generating_annotations_for_params", new String[]
-              { ap.alignFrame.getTitle() })), oom);
+              "label.generating_features_for_params",
+              new String[] { ap.alignFrame.getTitle() })
+              : MessageManager.formatMessage(
+                      "label.generating_annotations_for_params",
+                      new String[] { ap.alignFrame.getTitle() })), oom);
       cap.dispose();
     }
 
     close_actionPerformed(null);
   }
+
   public void close_actionPerformed(ActionEvent e)
   {
     try