(JAL-969) refactored alignmentViewport base class to own package and pulled up most...

[jalview.git] / src / jalview / gui / AnnotationExporter.java

diff --git a/src/jalview/gui/AnnotationExporter.java b/src/jalview/gui/AnnotationExporter.java
index 75399b6..ffc5c1c 100755 (executable)
--- a/src/jalview/gui/AnnotationExporter.java
+++ b/src/jalview/gui/AnnotationExporter.java
@@ -105,13 +105,13 @@ public class AnnotationExporter extends JPanel
       {\r
         if (GFFFormat.isSelected())\r
         {\r
-          text = new FeaturesFile().printGFFFormat(ap.av.alignment\r
+          text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()\r
                   .getDataset().getSequencesArray(),\r
                   getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);\r
         }\r
         else\r
         {\r
-          text = new FeaturesFile().printJalviewFormat(ap.av.alignment\r
+          text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()\r
                   .getDataset().getSequencesArray(),\r
                   getDisplayedFeatureCols(), true, ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);\r
         }\r
@@ -152,13 +152,13 @@ public class AnnotationExporter extends JPanel
     {\r
       if (GFFFormat.isSelected())\r
       {\r
-        text = new FeaturesFile().printGFFFormat(ap.av.alignment\r
+        text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()\r
                 .getDataset().getSequencesArray(),\r
                 getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());\r
       }\r
       else\r
       {\r
-        text = new FeaturesFile().printJalviewFormat(ap.av.alignment\r
+        text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()\r
                 .getDataset().getSequencesArray(),\r
                 getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());\r
       }\r