-\r
/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
-\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.gui;\r
\r
-import javax.swing.*;\r
-import java.awt.event.*;\r
import java.awt.*;\r
+import java.awt.event.*;\r
import java.awt.image.*;\r
+import javax.swing.*;\r
+\r
import jalview.datamodel.*;\r
-import jalview.io.FormatAdapter;\r
\r
-public class AnnotationLabels extends JPanel implements MouseListener, MouseMotionListener, ActionListener\r
+public class AnnotationLabels\r
+ extends JPanel implements MouseListener,\r
+ MouseMotionListener, ActionListener\r
{\r
- boolean active = false;\r
- Image image;\r
- AlignmentPanel ap ;\r
- boolean resizing = false;\r
- int oldY, mouseX;\r
static String ADDNEW = "Add New Row";\r
static String HIDE = "Hide This Row";\r
static String DELETE = "Delete This Row";\r
- static String SHOWALL="Show All Hidden Rows";\r
- static String OUTPUT_TEXT="Show Values In Textbox";\r
+ static String SHOWALL = "Show All Hidden Rows";\r
+ static String OUTPUT_TEXT = "Show Values In Textbox";\r
+ boolean active = false;\r
+ Image image;\r
+ AlignmentPanel ap;\r
+ boolean resizing = false;\r
+ int oldY;\r
+ int mouseX;\r
int selectedRow = 0;\r
int scrollOffset = 0;\r
\r
\r
java.net.URL url = getClass().getResource("/images/idwidth.gif");\r
Image temp = null;\r
+\r
if (url != null)\r
+ {\r
temp = java.awt.Toolkit.getDefaultToolkit().createImage(url);\r
+ }\r
\r
try\r
{\r
mt.addImage(temp, 0);\r
mt.waitForID(0);\r
}\r
- catch (Exception ex) {}\r
+ catch (Exception ex)\r
+ {\r
+ }\r
\r
- BufferedImage bi = new BufferedImage(temp.getHeight(this), temp.getWidth(this),\r
+ BufferedImage bi = new BufferedImage(temp.getHeight(this),\r
+ temp.getWidth(this),\r
BufferedImage.TYPE_INT_RGB);\r
Graphics2D g = (Graphics2D) bi.getGraphics();\r
g.rotate(Math.toRadians(90));\r
{\r
AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
\r
- if(evt.getActionCommand().equals(ADDNEW))\r
+ if (evt.getActionCommand().equals(ADDNEW))\r
{\r
- String label = JOptionPane.showInputDialog(this, "Label for annotation");\r
- if(label==null)\r
+ String label = JOptionPane.showInputDialog(this,\r
+ "Label for annotation");\r
+\r
+ if (label == null)\r
+ {\r
label = "";\r
- ap.av.alignment.addAnnotation(new AlignmentAnnotation\r
- (label,\r
- "New description",\r
- new Annotation[ap.av.alignment.getWidth()]));\r
+ }\r
+\r
+ ap.av.alignment.addAnnotation(new AlignmentAnnotation(label,\r
+ "New description",\r
+ new Annotation[ap.av.alignment.getWidth()]));\r
+ }\r
+ else if (evt.getActionCommand().equals(HIDE))\r
+ {\r
+ aa[selectedRow].visible = false;\r
+\r
+ if (aa[selectedRow].label.equals("Conservation"))\r
+ {\r
+ ap.av.showConservation = false;\r
+ }\r
+\r
+ if (aa[selectedRow].label.equals("Quality"))\r
+ {\r
+ ap.av.showQuality = false;\r
+ }\r
+\r
+ if (aa[selectedRow].label.equals("Consensus"))\r
+ {\r
+ ap.av.showIdentity = false;\r
+ }\r
+ }\r
+ else if (evt.getActionCommand().equals(DELETE))\r
+ {\r
+ ap.av.alignment.deleteAnnotation(aa[selectedRow]);\r
+ }\r
+ else if (evt.getActionCommand().equals(SHOWALL))\r
+ {\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ aa[i].visible = true;\r
+ }\r
+ }\r
+ else if (evt.getActionCommand().equals(OUTPUT_TEXT))\r
+ {\r
+ CutAndPasteTransfer cap = new CutAndPasteTransfer();\r
+ Desktop.addInternalFrame(cap,\r
+ ap.alignFrame.getTitle() + " - " +\r
+ aa[selectedRow].label, 500,\r
+ 100);\r
+ cap.setText(aa[selectedRow].toString());\r
}\r
- else if(evt.getActionCommand().equals(HIDE))\r
- {\r
- aa[selectedRow].visible = false;\r
- if(aa[selectedRow].label.equals("Conservation"))\r
- ap.av.showConservation = false;\r
- if(aa[selectedRow].label.equals("Quality"))\r
- ap.av.showQuality = false;\r
- if(aa[selectedRow].label.equals("Consensus"))\r
- ap.av.showIdentity = false;\r
- }\r
- else if(evt.getActionCommand().equals(DELETE))\r
- {\r
- ap.av.alignment.deleteAnnotation(aa[selectedRow]);\r
- }\r
- else if(evt.getActionCommand().equals(SHOWALL))\r
- {\r
- for(int i=0; i<aa.length; i++)\r
- aa[i].visible = true;\r
- }\r
- else if(evt.getActionCommand().equals(OUTPUT_TEXT))\r
- {\r
- CutAndPasteTransfer cap = new CutAndPasteTransfer();\r
- Desktop.addInternalFrame(cap, ap.alignFrame.getTitle()+" - "+ aa[selectedRow].label, 500, 100);\r
- cap.setText( aa[selectedRow].toString() );\r
- }\r
-\r
- ap.annotationPanel.adjustPanelHeight();\r
- ap.repaint();\r
\r
+ ap.annotationPanel.adjustPanelHeight();\r
+ ap.repaint();\r
}\r
\r
public void mousePressed(MouseEvent evt)\r
{\r
int y = evt.getY() - scrollOffset;\r
\r
- AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
- if(aa==null || aa.length==0)\r
- {\r
- JPopupMenu pop = new JPopupMenu("Annotations");\r
- JMenuItem item = new JMenuItem(ADDNEW);\r
- item.addActionListener(this);\r
- pop.add(item);\r
- pop.show(this, evt.getX(), evt.getY());\r
- return;\r
- }\r
-\r
- int height = 0;\r
- for (int i = 0; i < aa.length; i++)\r
- {\r
- if(!aa[i].visible)\r
- continue;\r
-\r
- height += aa[i].height;\r
- if(y<height)\r
- {\r
- selectedRow = i;\r
- break;\r
- }\r
- }\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
\r
+ if ( (aa == null) || (aa.length == 0))\r
+ {\r
JPopupMenu pop = new JPopupMenu("Annotations");\r
JMenuItem item = new JMenuItem(ADDNEW);\r
item.addActionListener(this);\r
pop.add(item);\r
- item = new JMenuItem(HIDE);\r
- item.addActionListener(this);\r
- pop.add(item);\r
- item = new JMenuItem(DELETE);\r
- item.addActionListener(this);\r
- pop.add(item);\r
- item = new JMenuItem(SHOWALL);\r
- item.addActionListener(this);\r
- pop.add(item);\r
- item = new JMenuItem(OUTPUT_TEXT);\r
- item.addActionListener(this);\r
- pop.add(item);\r
pop.show(this, evt.getX(), evt.getY());\r
\r
+ return;\r
+ }\r
+\r
+ int height = 0;\r
+\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ if (!aa[i].visible)\r
+ {\r
+ continue;\r
+ }\r
+\r
+ height += aa[i].height;\r
+\r
+ if (y < height)\r
+ {\r
+ selectedRow = i;\r
+\r
+ break;\r
+ }\r
+ }\r
+\r
+ JPopupMenu pop = new JPopupMenu("Annotations");\r
+ JMenuItem item = new JMenuItem(ADDNEW);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ item = new JMenuItem(HIDE);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ item = new JMenuItem(DELETE);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ item = new JMenuItem(SHOWALL);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ item = new JMenuItem(OUTPUT_TEXT);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ pop.show(this, evt.getX(), evt.getY());\r
+\r
oldY = evt.getY();\r
}\r
\r
- public void mouseReleased(MouseEvent evt){ active = false; repaint(); }\r
- public void mouseEntered(MouseEvent evt) { active = true; repaint();}\r
- public void mouseExited(MouseEvent evt) { active = false; repaint();}\r
+ public void mouseReleased(MouseEvent evt)\r
+ {\r
+ active = false;\r
+ repaint();\r
+ }\r
+\r
+ public void mouseEntered(MouseEvent evt)\r
+ {\r
+ active = true;\r
+ repaint();\r
+ }\r
+\r
+ public void mouseExited(MouseEvent evt)\r
+ {\r
+ active = false;\r
+ repaint();\r
+ }\r
+\r
public void mouseDragged(MouseEvent evt)\r
{\r
active = true;\r
+\r
Dimension d = ap.annotationScroller.getPreferredSize();\r
int dif = evt.getY() - oldY;\r
\r
dif /= ap.av.charHeight;\r
dif *= ap.av.charHeight;\r
\r
- if(d.height-dif>20)\r
+ if ( (d.height - dif) > 20)\r
{\r
- ap.annotationScroller.setPreferredSize(new Dimension(d.width,d.height - dif));\r
+ ap.annotationScroller.setPreferredSize(new Dimension(d.width,\r
+ d.height - dif));\r
d = ap.annotationSpaceFillerHolder.getPreferredSize();\r
- ap.annotationSpaceFillerHolder.setPreferredSize(new Dimension(d.width,d.height - dif));\r
+ ap.annotationSpaceFillerHolder.setPreferredSize(new Dimension(\r
+ d.width, d.height - dif));\r
ap.repaint();\r
}\r
+\r
ap.addNotify();\r
}\r
\r
- public void mouseMoved(MouseEvent evt) {}\r
- public void mouseClicked(MouseEvent evt) {}\r
+ public void mouseMoved(MouseEvent evt)\r
+ {\r
+ }\r
+\r
+ public void mouseClicked(MouseEvent evt)\r
+ {\r
+ }\r
\r
public void paintComponent(Graphics g1)\r
{\r
- Graphics2D g = (Graphics2D)g1;\r
- g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,RenderingHints.VALUE_ANTIALIAS_ON);\r
+ Graphics2D g = (Graphics2D) g1;\r
+ g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
+ RenderingHints.VALUE_ANTIALIAS_ON);\r
\r
drawComponent(g);\r
}\r
{\r
FontMetrics fm = g.getFontMetrics(g.getFont());\r
g.setColor(Color.white);\r
- g.fillRect(0,0, getWidth(), getHeight());\r
+ g.fillRect(0, 0, getWidth(), getHeight());\r
\r
g.translate(0, scrollOffset);\r
g.setColor(Color.black);\r
\r
- AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
- int y = g.getFont().getSize();\r
- int x = 0;\r
-\r
- if(aa!=null)\r
- for(int i=0; i<aa.length; i++)\r
- {\r
- if(!aa[i].visible)\r
- continue;\r
-\r
- x = getWidth() - fm.stringWidth(aa[i].label)-3;\r
-\r
- if(aa[i].isGraph)\r
- y+=(aa[i].height/3);\r
-\r
- g.drawString(aa[i].label, x, y);\r
-\r
- if(aa[i].isGraph)\r
- y+=(2*aa[i].height/3);\r
- else\r
- y+=aa[i].height;\r
- }\r
-\r
- if (active)\r
- {\r
- if (image != null)\r
- g.drawImage(image, 2, 0, this);\r
- }\r
-\r
- if (aa == null || aa.length<1)\r
- {\r
- g.drawString("Right click", 2, 8);\r
- g.drawString("to add annotation", 2, 18);\r
- }\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
+ int y = g.getFont().getSize();\r
+ int x = 0;\r
\r
+ if (aa != null)\r
+ {\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ if (!aa[i].visible)\r
+ {\r
+ continue;\r
+ }\r
+\r
+ x = getWidth() - fm.stringWidth(aa[i].label) - 3;\r
+\r
+ if (aa[i].isGraph)\r
+ {\r
+ y += (aa[i].height / 3);\r
+ }\r
+\r
+ g.drawString(aa[i].label, x, y);\r
+\r
+ if (aa[i].isGraph)\r
+ {\r
+ y += ( (2 * aa[i].height) / 3);\r
+ }\r
+ else\r
+ {\r
+ y += aa[i].height;\r
+ }\r
+ }\r
+ }\r
\r
+ if (active)\r
+ {\r
+ if (image != null)\r
+ {\r
+ g.drawImage(image, 2, 0, this);\r
+ }\r
+ }\r
\r
+ if ( (aa == null) || (aa.length < 1))\r
+ {\r
+ g.drawString("Right click", 2, 8);\r
+ g.drawString("to add annotation", 2, 18);\r
+ }\r
}\r
-\r
}\r
git://source.jalview.org / jalview.git / blobdiff