SequenceI [] dseqs=new SequenceI[] { sq.getDatasetSequence()};
if (dseqs[0]==null) {
dseqs[0] = new Sequence(sq);
- dseqs[0].setSequence(jalview.analysis.AlignSeq.extractGaps(jalview.util.Comparison.GapChars, sq.getSequence()));
+ dseqs[0].setSequence(
+ jalview.analysis.AlignSeq.extractGaps(
+ jalview.util.Comparison.GapChars,
+ sq.getSequenceAsString()));
+
sq.setDatasetSequence(dseqs[0]);
}
Alignment ds=new Alignment(dseqs);