profile visualizations are now logos

[jalview.git] / src / jalview / gui / AnnotationLabels.java

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 61b9c31..87955b0 100755 (executable)
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -565,7 +565,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           pop.add(chist);
           final JCheckBoxMenuItem cprof = new JCheckBoxMenuItem(
                   "Show Group Logo", aa[selectedRow].groupRef
-                          .isIncludeAllConsSymbols());
+                          .isShowSequenceLogo());
           cprof.addActionListener(new ActionListener()
           {
             public void actionPerformed(ActionEvent e)
@@ -602,7 +602,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           });
           pop.add(chist);
           final JCheckBoxMenuItem cprof = new JCheckBoxMenuItem(
-                  "Show Logo", av.isShowConsensusProfile());
+                  "Show Logo", av.isShowSequenceLogo());
           cprof.addActionListener(new ActionListener()
           {
             public void actionPerformed(ActionEvent e)
@@ -613,7 +613,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
               // view
               // can be
               // updated.
-              av.setShowConsensusProfile(cprof.getState());
+              av.setShowSequenceLogo(cprof.getState());
               ap.repaint();
               // ap.annotationPanel.paint(ap.annotationPanel.getGraphics());
             }