import jalview.analysis.AlignSeq;
import jalview.analysis.AlignmentUtils;
-import jalview.bin.Instance;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
/**
* height in pixels for allowing height adjuster to be active
*/
- private static final int HEIGHT_ADJUSTER_HEIGHT = 10;
+ private static int HEIGHT_ADJUSTER_HEIGHT = 10;
private static final Font font = new Font("Arial", Font.PLAIN, 11);
seqs, omitHidden, alignmentStartEnd);
Toolkit.getDefaultToolkit().getSystemClipboard()
- .setContents(new StringSelection(output), Instance.getDesktop());
+ .setContents(new StringSelection(output), Desktop.instance);
HiddenColumns hiddenColumns = null;
av.getAlignment().getHiddenColumns());
}
- Instance.getDesktop().jalviewClipboard = new Object[] { seqs, ds, // what is
- // the
- // dataset
+ Desktop.jalviewClipboard = new Object[] { seqs, ds, // what is the dataset
// of a consensus
// sequence ? need to
// flag