}
String label = av.getAlignment().getAlignmentAnnotation()[i].label;
// add associated sequence ID if available
- if (!isSeqAssociated
- && av.getAlignment().getAlignmentAnnotation()[i].sequenceRef != null)
+ if (av.getAlignment().getAlignmentAnnotation()[i].sequenceRef != null)
{
label = label
+ "_"
{
anmap[list.size()] = i;
list.add(label);
-
}
else
{