import java.awt.Graphics;
import java.awt.Rectangle;
import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileOutputStream;
import javax.swing.JColorChooser;
import javax.swing.JInternalFrame;
import javax.swing.JMenu;
-import javax.swing.JOptionPane;
+import javax.swing.JMenuItem;
import javax.swing.JPanel;
import javax.swing.JSplitPane;
import javax.swing.SwingUtilities;
private void initMenus()
{
+ String jmol = MessageManager.getString("label.jmol");
+ viewerActionMenu.setText(jmol);
seqColour.setSelected(jmb.isColourBySequence());
viewerColour.setSelected(!jmb.isColourBySequence());
if (_colourwith == null)
}
});
+
+ JMenuItem writeFeatures = new JMenuItem(
+ MessageManager.getString("label.create_viewer_attributes"));
+ writeFeatures.setToolTipText(MessageManager.formatMessage(
+ "label.create_viewer_attributes_tip", jmol));
+ writeFeatures.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ sendFeaturesToViewer();
+ }
+ });
+ viewerActionMenu.add(writeFeatures);
+
+ final JMenu fetchAttributes = new JMenu(MessageManager.formatMessage(
+ "label.fetch_viewer_attributes", jmol));
+ fetchAttributes.setToolTipText(MessageManager.formatMessage(
+ "label.fetch_viewer_attributes_tip", jmol));
+ fetchAttributes.addMouseListener(new MouseAdapter()
+ {
+
+ @Override
+ public void mouseEntered(MouseEvent e)
+ {
+ buildAttributesMenu(fetchAttributes);
+ }
+ });
+ viewerActionMenu.add(fetchAttributes);
}
IProgressIndicator progressBar = null;
setChainMenuItems(jmb.getChainNames());
this.setTitle(jmb.getViewerTitle());
- if (jmb.getPdbFile().length > 1 && jmb.getSequence().length > 1)
- {
+ // if (jmb.getPdbFile().length > 1 && jmb.getSequence().length > 1)
+ // {
viewerActionMenu.setVisible(true);
- }
+ // }
if (!jmb.isLoadingFromArchive())
{
seqColour_actionPerformed(null);
return jmb;
}
+ @Override
+ protected void sendFeaturesToViewer()
+ {
+ /*
+ * Atom properties may also be set directly using {atom expression}.xxxx = y.
+ */
+ }
+
+ @Override
+ protected void getResidueAttributes(String attName)
+ {
+ /*
+ * getproperty atominfo returns properties for all atoms
+ * - could parse this for unique/specific property names?
+ *
+ * _ipt atomID atomIndex atomno bondCount chain clickabilityFlags colix color coord
+ * element elemno formalCharge groupID info model name occupancy partialCharge
+ * polymerLength radius resname resno shape spacefill structure sym temp
+ * visibilityFlags visible x y z
+ *
+ * getproperty chaininfo is residue level info
+ * no sign of average bfactor for a residue :-(
+ */
+ }
+
+ @Override
+ protected List<String> getResidueAttributeNames()
+ {
+ // TODO Auto-generated method stub
+ return null;
+ }
+
}