Merge branch 'develop' into feature/JAL-3390hideUnmappedStructure

[jalview.git] / src / jalview / gui / AppJmol.java

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 7cf10e7..06ce7ca 100644 (file)
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -374,9 +374,9 @@ public class AppJmol extends StructureViewerBase
     }
 
     // refresh the sequence colours for the new structure(s)
-    for (AlignmentViewPanel ap : _colourwith)
+    for (AlignmentViewPanel avp : _colourwith)
     {
-      jmb.updateColours(ap);
+      jmb.updateColours(avp);
     }
     // do superposition if asked to
     if (alignAddedStructures)