JAL-2422 pull-up refactoring of structure commands (continued)

[jalview.git] / src / jalview / gui / AppJmol.java

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 83ec177..daf31fc 100644 (file)
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -42,9 +42,7 @@ import java.awt.event.ActionEvent;
 import java.io.File;
 import java.util.ArrayList;
 import java.util.List;
-import java.util.Vector;
 
-import javax.swing.JCheckBoxMenuItem;
 import javax.swing.JPanel;
 import javax.swing.JSplitPane;
 import javax.swing.SwingUtilities;
@@ -247,30 +245,12 @@ public class AppJmol extends StructureViewerBase
     {
       command = "";
     }
-    jmb.evalStateCommand(command);
-    jmb.evalStateCommand("set hoverDelay=0.1");
+    jmb.executeCommand(command, false);
+    jmb.executeCommand("set hoverDelay=0.1", false);
     jmb.setFinishedInit(true);
   }
 
   @Override
-  void showSelectedChains()
-  {
-    Vector<String> toshow = new Vector<>();
-    for (int i = 0; i < chainMenu.getItemCount(); i++)
-    {
-      if (chainMenu.getItem(i) instanceof JCheckBoxMenuItem)
-      {
-        JCheckBoxMenuItem item = (JCheckBoxMenuItem) chainMenu.getItem(i);
-        if (item.isSelected())
-        {
-          toshow.addElement(item.getText());
-        }
-      }
-    }
-    jmb.centerViewer(toshow);
-  }
-
-  @Override
   public void closeViewer(boolean closeExternalViewer)
   {
     // Jmol does not use an external viewer
@@ -348,7 +328,7 @@ public class AppJmol extends StructureViewerBase
 
       try
       {
-        jmb.evalStateCommand(command);
+        jmb.executeCommand(command, false);
       } catch (OutOfMemoryError oomerror)
       {
         new OOMWarning("When trying to add structures to the Jmol viewer!",