JAL-1759 unused JmolPopup removed, code tidy for generics

[jalview.git] / src / jalview / gui / AppJmolBinding.java

diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java
index 1283019..5c4346e 100644 (file)
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -32,7 +32,6 @@ import java.util.Map;
 
 import org.jmol.api.JmolAppConsoleInterface;
 import org.jmol.java.BS;
-import org.jmol.popup.JmolAwtPopup;
 import org.openscience.jmol.app.jmolpanel.console.AppConsole;
 
 public class AppJmolBinding extends JalviewJmolBinding
@@ -126,7 +125,7 @@ public class AppJmolBinding extends JalviewJmolBinding
 
   public void updateColours(Object source)
   {
-    AlignmentPanel ap = (AlignmentPanel) source, topap;
+    AlignmentPanel ap = (AlignmentPanel) source;
     // ignore events from panels not used to colour this view
     if (!appJmolWindow.isUsedforcolourby(ap))
     {
@@ -134,7 +133,7 @@ public class AppJmolBinding extends JalviewJmolBinding
     }
     if (!isLoadingFromArchive())
     {
-      colourBySequence(ap.av.isShowSequenceFeatures(), ap);
+      colourBySequence(ap);
     }
   }
 
@@ -154,8 +153,8 @@ public class AppJmolBinding extends JalviewJmolBinding
 
   public void newJmolPopup(String menuName)
   {
-    jmolpopup = new JmolAwtPopup();
-    jmolpopup.jpiInitialize((viewer), menuName);
+    // jmolpopup = new JmolAwtPopup();
+    // jmolpopup.jpiInitialize((viewer), menuName);
   }
 
   @Override