JAL-1807 merge from JAL-1759jmolUpdate

[jalview.git] / src / jalview / gui / AppVarnaBinding.java

diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java
index 25af7d1..956c2e1 100644 (file)
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -20,11 +20,6 @@
  */
 package jalview.gui;
 
-import jalview.datamodel.SequenceI;
-import jalview.ext.varna.JalviewVarnaBinding;
-import jalview.structure.AtomSpec;
-import jalview.util.MessageManager;
-
 import java.awt.BorderLayout;
 import java.awt.Color;
 import java.awt.Component;
@@ -64,10 +59,38 @@ import fr.orsay.lri.varna.models.FullBackup;
 import fr.orsay.lri.varna.models.VARNAConfig;
 import fr.orsay.lri.varna.models.rna.RNA;
 
+import jalview.datamodel.SequenceI;
+import jalview.ext.varna.JalviewVarnaBinding;
+import jalview.structure.AtomSpec;
+import jalview.util.MessageManager;
+
 public class AppVarnaBinding extends JalviewVarnaBinding
 {
   public VARNAPanel vp;
 
+  // remove unused (commented out) fields?
+  // protected JPanel _tools = new JPanel();
+  //
+  // private JPanel _input = new JPanel();
+  //
+  // private JPanel _strPanel = new JPanel();
+  //
+  // private JTextField _str = new JTextField();
+  //
+  // private JTextField _seq = new JTextField();
+  //
+  // private JLabel _strLabel = new JLabel(
+  // MessageManager.getString("label.str"));
+  //
+  // private JButton _updateButton = new JButton(
+  // MessageManager.getString("action.update"));
+  //
+  // private JButton _deleteButton = new JButton(
+  // MessageManager.getString("action.delete"));
+  //
+  // private JButton _duplicateButton = new JButton(
+  // MessageManager.getString("action.snapshot"));
+  //
   protected JPanel _listPanel = new JPanel();
 
   private ReorderableJList _sideList = null;
@@ -142,6 +165,48 @@ public class AppVarnaBinding extends JalviewVarnaBinding
 
     vp.setBackground(_backgroundColor);
 
+    // MC commented out stuff not added to panel - remove?
+    // Font textFieldsFont = Font.decode("MonoSpaced-PLAIN-12");
+    //
+    // _seq.setFont(textFieldsFont);
+    // if (!rnaList.isEmpty())
+    // {
+    // _seq.setText(rnaList.get(0).getSeq());
+    // }
+
+    // _updateButton.addActionListener(new ActionListener()
+    // {
+    // public void actionPerformed(ActionEvent e)
+    // {
+    // FullBackup sel = (FullBackup) _sideList.getSelectedValue();
+    // sel.rna.setSequence("A");
+    // }
+    // });
+    //
+    // _strLabel.setPreferredSize(new Dimension(marginTools, 15));
+    // _strLabel.setHorizontalTextPosition(JLabel.LEFT);
+    // _str.setFont(textFieldsFont);
+    // _strPanel.setLayout(new BorderLayout());
+    // _strPanel.add(_strLabel, BorderLayout.WEST);
+    // _strPanel.add(_str, BorderLayout.CENTER);
+    //
+    // _input.setLayout(new GridLayout(1, 0));
+    // _input.add(_strPanel);
+    //
+    // JPanel goPanel = new JPanel();
+    // goPanel.setLayout(new BorderLayout());
+    //
+    // _tools.setLayout(new BorderLayout());
+    // _tools.add(_input, BorderLayout.CENTER);
+    // _tools.add(goPanel, BorderLayout.EAST);
+    //
+    // goPanel.add(_updateButton, BorderLayout.CENTER);
+    //
+    // JPanel ops = new JPanel();
+    // ops.setLayout(new GridLayout(1, 2));
+    // ops.add(_deleteButton);
+    // ops.add(_duplicateButton);
+
     JLabel j = new JLabel(
             MessageManager.getString("label.structures_manager"),
             JLabel.CENTER);