JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...

[jalview.git] / src / jalview / gui / AssociatePdbFileWithSeq.java

diff --git a/src/jalview/gui/AssociatePdbFileWithSeq.java b/src/jalview/gui/AssociatePdbFileWithSeq.java
index 08a6802..1f540da 100644 (file)
--- a/src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/src/jalview/gui/AssociatePdbFileWithSeq.java
@@ -61,8 +61,8 @@ public class AssociatePdbFileWithSeq
   {
     PDBEntry entry = new PDBEntry();
     StructureFile pdbfile = null;
-    pdbfile = Desktop.getStructureSelectionManager().setMapping(false,
-            new SequenceI[]
+    pdbfile = Desktop.getStructureSelectionManager()
+            .setMapping(false, new SequenceI[]
             { sequence }, null, fileName, type);
     if (pdbfile == null)
     {
@@ -84,7 +84,8 @@ public class AssociatePdbFileWithSeq
     entry.setType(PDBEntry.Type.FILE);
     entry.setFile(fileName);
     sequence.getDatasetSequence().addPDBId(entry);
-    Desktop.getStructureSelectionManager().registerPDBEntry(entry);
+    Desktop.getInstance().getStructureSelectionManager()
+            .registerPDBEntry(entry);
     return entry;
   }
 }