JAL-3253-applet headless branch - just experimenting.

[jalview.git] / src / jalview / gui / AssociatePdbFileWithSeq.java

diff --git a/src/jalview/gui/AssociatePdbFileWithSeq.java b/src/jalview/gui/AssociatePdbFileWithSeq.java
index 08a6802..acc1394 100644 (file)
--- a/src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/src/jalview/gui/AssociatePdbFileWithSeq.java
@@ -24,6 +24,7 @@ import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.io.DataSourceType;
 import jalview.io.StructureFile;
+import jalview.structure.StructureSelectionManager;
 import jalview.util.MessageManager;
 
 /**
@@ -61,8 +62,9 @@ public class AssociatePdbFileWithSeq
   {
     PDBEntry entry = new PDBEntry();
     StructureFile pdbfile = null;
-    pdbfile = Desktop.getStructureSelectionManager().setMapping(false,
-            new SequenceI[]
+    pdbfile = StructureSelectionManager
+            .getStructureSelectionManager(Desktop.getInstance())
+            .setMapping(false, new SequenceI[]
             { sequence }, null, fileName, type);
     if (pdbfile == null)
     {
@@ -84,7 +86,8 @@ public class AssociatePdbFileWithSeq
     entry.setType(PDBEntry.Type.FILE);
     entry.setFile(fileName);
     sequence.getDatasetSequence().addPDBId(entry);
-    Desktop.getStructureSelectionManager().registerPDBEntry(entry);
+    Desktop.getInstance().getStructureSelectionManager()
+            .registerPDBEntry(entry);
     return entry;
   }
 }