JAL-3518 basic refactoring / pull up of superposeStructures; to tidy!

[jalview.git] / src / jalview / gui / ChimeraViewFrame.java

diff --git a/src/jalview/gui/ChimeraViewFrame.java b/src/jalview/gui/ChimeraViewFrame.java
index ab5ee7a..1a5e901 100644 (file)
--- a/src/jalview/gui/ChimeraViewFrame.java
+++ b/src/jalview/gui/ChimeraViewFrame.java
@@ -208,8 +208,7 @@ public class ChimeraViewFrame extends StructureViewerBase
           SequenceI[][] seqs)
   {
     createProgressBar();
-    jmb = new JalviewChimeraBindingModel(this,
-            ap.getStructureSelectionManager(), pdbentrys, seqs, null);
+    jmb = newBindingModel(ap, pdbentrys, seqs);
     addAlignmentPanel(ap);
     useAlignmentPanelForColourbyseq(ap);
 
@@ -237,6 +236,13 @@ public class ChimeraViewFrame extends StructureViewerBase
 
   }
 
+  protected JalviewChimeraBindingModel newBindingModel(AlignmentPanel ap,
+          PDBEntry[] pdbentrys, SequenceI[][] seqs)
+  {
+    return new JalviewChimeraBindingModel(this,
+            ap.getStructureSelectionManager(), pdbentrys, seqs, null);
+  }
+
   /**
    * Create a new viewer from saved session state data including Chimera session
    * file
@@ -753,20 +759,4 @@ public class ChimeraViewFrame extends StructureViewerBase
   {
     return "Chimera";
   }
-
-  /**
-   * Sends commands to align structures according to associated alignment(s).
-   * 
-   * @return
-   */
-  @Override
-  protected String alignStructsWithAllAlignPanels()
-  {
-    String reply = super.alignStructsWithAllAlignPanels();
-    if (reply != null)
-    {
-      statusBar.setText("Superposition failed: " + reply);
-    }
-    return reply;
-  }
 }