JAL-3253 jalview.bin.Instance streamlining

[jalview.git] / src / jalview / gui / CrossRefAction.java

diff --git a/src/jalview/gui/CrossRefAction.java b/src/jalview/gui/CrossRefAction.java
index 7570858..3f3c298 100644 (file)
--- a/src/jalview/gui/CrossRefAction.java
+++ b/src/jalview/gui/CrossRefAction.java
@@ -25,7 +25,6 @@ import jalview.analysis.CrossRef;
 import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureSettingsModelI;
 import jalview.bin.Cache;
-import jalview.bin.Instance;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.DBRefEntry;
@@ -35,7 +34,6 @@ import jalview.datamodel.SequenceI;
 import jalview.ext.ensembl.EnsemblInfo;
 import jalview.ext.ensembl.EnsemblMap;
 import jalview.io.gff.SequenceOntologyI;
-import jalview.structure.StructureSelectionManager;
 import jalview.util.DBRefUtils;
 import jalview.util.MapList;
 import jalview.util.MappingUtils;
@@ -109,7 +107,8 @@ public class CrossRefAction implements Runnable
       /*
        * get display scheme (if any) to apply to features
        */
-      FeatureSettingsModelI featureColourScheme = new SequenceFetcher()
+      FeatureSettingsModelI featureColourScheme = SequenceFetcher
+              .getInstance()
               .getFeatureColourScheme(source);
 
       AlignmentI xrefsAlignment = makeCrossReferencesAlignment(dataset,
@@ -437,14 +436,12 @@ public class CrossRefAction implements Runnable
     copyAlignment
             .setGapCharacter(alignFrame.viewport.getGapCharacter());
 
-    StructureSelectionManager ssm = StructureSelectionManager
-            .getStructureSelectionManager(Instance.getDesktop());
-
     /*
      * register any new mappings for sequence mouseover etc
      * (will not duplicate any previously registered mappings)
      */
-    ssm.registerMappings(dataset.getCodonFrames());
+    Desktop.getStructureSelectionManager()
+            .registerMappings(dataset.getCodonFrames());
 
     if (copyAlignment.getHeight() <= 0)
     {