JAL-629 Change all stdout and stderr output to use Console.outPrintln and Console...

[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 12ff20b..efefa21 100644 (file)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -439,7 +439,7 @@ public class Desktop extends jalview.jbgui.GDesktop
          * Send this message to stderr as the warning that follows (due to
          * reflection) also goes to stderr.
          */
-        System.err.println(
+        jalview.bin.Console.errPrintln(
                 "Linux platform only! You may have the following warning next: \"WARNING: An illegal reflective access operation has occurred\"\nThis is expected and cannot be avoided, sorry about that.");
       }
       final String awtAppClassName = "awtAppClassName";
@@ -873,7 +873,7 @@ public class Desktop extends jalview.jbgui.GDesktop
         }
       } catch (Exception ex)
       {
-        System.out.println(
+        jalview.bin.Console.outPrintln(
                 "Unable to paste alignment from system clipboard:\n" + ex);
       }
     }
@@ -1630,7 +1630,7 @@ public class Desktop extends jalview.jbgui.GDesktop
       }
     } catch (Exception ex)
     {
-      System.err.println("Error opening help: " + ex.getMessage());
+      jalview.bin.Console.errPrintln("Error opening help: " + ex.getMessage());
     }
   }
 
@@ -1861,7 +1861,7 @@ public class Desktop extends jalview.jbgui.GDesktop
     boolean autoSave = projectFile != null && !saveAs
             && BackupFiles.getEnabled();
 
-    // System.out.println("autoSave="+autoSave+", projectFile='"+projectFile+"',
+    // jalview.bin.Console.outPrintln("autoSave="+autoSave+", projectFile='"+projectFile+"',
     // saveAs="+saveAs+", Backups
     // "+(BackupFiles.getEnabled()?"enabled":"disabled"));
 
@@ -3410,7 +3410,7 @@ public class Desktop extends jalview.jbgui.GDesktop
         {
           if (Platform.isAMacAndNotJS())
           {
-            System.err.println(
+            jalview.bin.Console.errPrintln(
                     "Please ignore plist error - occurs due to problem with java 8 on OSX");
           }
         }