New branch created and author list changed to test the commit-function

[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
old mode 100755 (executable)
new mode 100644 (file)
index 580fceb..9797694
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -27,6 +27,7 @@ import java.awt.dnd.*;
 import java.awt.event.*;
 import java.beans.PropertyChangeEvent;
 import java.beans.PropertyChangeListener;
+import java.beans.PropertyVetoException;
 import java.io.BufferedInputStream;
 import java.io.BufferedOutputStream;
 import java.io.File;
@@ -47,10 +48,10 @@ import javax.swing.event.MenuListener;
  * 
  * 
  * @author $author$
- * @version $Revision$
+ * @version $Revision: 1.155 $
  */
 public class Desktop extends jalview.jbgui.GDesktop implements
-        DropTargetListener, ClipboardOwner, IProgressIndicator
+        DropTargetListener, ClipboardOwner, IProgressIndicator, jalview.api.StructureSelectionManagerProvider
 {
 
   private JalviewChangeSupport changeSupport = new JalviewChangeSupport();
@@ -231,9 +232,13 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     showMemusage.setSelected(selmemusage);
     desktop.setBackground(Color.white);
     getContentPane().setLayout(new BorderLayout());
+    // alternate config - have scrollbars - see notes in JAL-153
+    //JScrollPane sp = new JScrollPane();
+    //sp.getViewport().setView(desktop);
+    //getContentPane().add(sp, BorderLayout.CENTER);
     getContentPane().add(desktop, BorderLayout.CENTER);
-    desktop.setDragMode(JDesktopPane.OUTLINE_DRAG_MODE);
-
+      desktop.setDragMode(JDesktopPane.OUTLINE_DRAG_MODE);
+      
     // This line prevents Windows Look&Feel resizing all new windows to maximum
     // if previous window was maximised
     desktop.setDesktopManager(new MyDesktopManager(
@@ -577,6 +582,47 @@ public class Desktop extends jalview.jbgui.GDesktop implements
         }
       }
     });
+    menuItem.addMouseListener(new MouseListener()
+    {
+      
+      @Override
+      public void mouseReleased(MouseEvent e)
+      {
+      }
+      
+      @Override
+      public void mousePressed(MouseEvent e)
+      {
+      }
+      
+      @Override
+      public void mouseExited(MouseEvent e)
+      {
+        try
+        {
+          frame.setSelected(false);
+        } catch (PropertyVetoException e1)
+        {
+        }
+      }
+      
+      @Override
+      public void mouseEntered(MouseEvent e)
+      {
+        try
+        {
+          frame.setSelected(true);
+        } catch (PropertyVetoException e1)
+        {
+        }
+      }
+      
+      @Override
+      public void mouseClicked(MouseEvent e)
+      {
+        
+      }
+    });
 
     windowMenu.add(menuItem);
 
@@ -589,6 +635,10 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     } catch (java.beans.PropertyVetoException ve)
     {
     }
+    catch (java.lang.ClassCastException cex)
+    {
+      Cache.log.warn("Squashed a possible GUI implementation error. If you can recreate this, please look at http://issues.jalview.org/browse/JAL-869",cex);
+    }
   }
 
   public void lostOwnership(Clipboard clipboard, Transferable contents)
@@ -901,7 +951,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     }
     // TODO: update this text for each release or centrally store it for lite
     // and application
-    message.append("\nAuthors:  Jim Procter, Andrew Waterhouse, Michele Clamp, James Cuff, Steve Searle,\n    David Martin & Geoff Barton."
+    message.append("\nAuthors:  Jim Procter, Jan Engelhardt, Lauren Lui, Andrew Waterhouse, Michele Clamp, James Cuff, Steve Searle,\n    David Martin & Geoff Barton."
             + "\nDevelopment managed by The Barton Group, University of Dundee, Scotland, UK.\n"
             + "\nFor help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list\n"
             + "\nIf  you use Jalview, please cite:"
@@ -1132,11 +1182,18 @@ public class Desktop extends jalview.jbgui.GDesktop implements
 
     if (value == JalviewFileChooser.APPROVE_OPTION)
     {
-      java.io.File choice = chooser.getSelectedFile();
+      final Desktop me = this;
+      final java.io.File choice = chooser.getSelectedFile();
+      new Thread(new Runnable()
+      {
+        public void run()
+        {
+
       setProgressBar("Saving jalview project " + choice.getName(),
               choice.hashCode());
       jalview.bin.Cache.setProperty("LAST_DIRECTORY", choice.getParent());
       // TODO catch and handle errors for savestate
+      // TODO prevent user from messing with the Desktop whilst we're saving
       try
       {
         new Jalview2XML().SaveState(choice);
@@ -1149,12 +1206,13 @@ public class Desktop extends jalview.jbgui.GDesktop implements
         Cache.log
                 .error("Problems whilst trying to save to "
                         + choice.getName(), ex);
-        JOptionPane.showMessageDialog(this,
+        JOptionPane.showMessageDialog(me,
                 "Error whilst saving current state to " + choice.getName(),
                 "Couldn't save project", JOptionPane.WARNING_MESSAGE);
       }
       setProgressBar(null, choice.hashCode());
-
+        }
+      }).start();
     }
   }
 
@@ -1944,6 +2002,42 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     avp.clear();
     return afs;
   }
+  public AppJmol[] getJmols()
+  {
+    JInternalFrame[] frames = Desktop.desktop.getAllFrames();
+
+    if (frames == null)
+    {
+      return null;
+    }
+    Vector avp = new Vector();
+    try
+    {
+      // REVERSE ORDER
+      for (int i = frames.length - 1; i > -1; i--)
+      {
+        if (frames[i] instanceof AppJmol)
+        {
+          AppJmol af = (AppJmol) frames[i];
+          avp.addElement(af);
+        }
+      }
+    } catch (Exception ex)
+    {
+      ex.printStackTrace();
+    }
+    if (avp.size() == 0)
+    {
+      return null;
+    }
+    AppJmol afs[] = new AppJmol[avp.size()];
+    for (int i = 0, j = avp.size(); i < j; i++)
+    {
+      afs[i] = (AppJmol) avp.elementAt(i);
+    }
+    avp.clear();
+    return afs;
+  }
 
   /**
    * Add Groovy Support to Jalview
@@ -2284,4 +2378,5 @@ public class Desktop extends jalview.jbgui.GDesktop implements
     return wsparamManager;
   }
 
+
 }