JAL-3091 release notes for JAL-3104

[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 9d5cabd..b65c73c 100644 (file)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -515,7 +515,7 @@ public class Desktop extends jalview.jbgui.GDesktop
   {
     final Desktop me = this;
     // Thread off the news reader, in case there are connection problems.
-    addDialogThread(new Runnable()
+    new Thread(new Runnable()
     {
       @Override
       public void run()
@@ -526,13 +526,13 @@ public class Desktop extends jalview.jbgui.GDesktop
         showNews.setVisible(true);
         Cache.log.debug("Completed news thread.");
       }
-    });
+    }).start();
   }
 
   public void getIdentifiersOrgData()
   {
     // Thread off the identifiers fetcher
-    addDialogThread(new Runnable()
+    new Thread(new Runnable()
     {
       @Override
       public void run()
@@ -549,7 +549,8 @@ public class Desktop extends jalview.jbgui.GDesktop
                   + e.getMessage());
         }
       }
-    });
+    }).start();
+    ;
   }
 
   @Override
@@ -1939,6 +1940,16 @@ public class Desktop extends jalview.jbgui.GDesktop
         }
       }
     }
+    for (AlignmentPanel ap : source.alignPanels)
+    {
+      SwingUtilities.invokeLater(new Runnable() { 
+        @Override
+        public void run()
+        {
+          ap.setSize(ap.getSize());
+        }
+      });
+    }
 
   }
 
@@ -3471,7 +3482,10 @@ public class Desktop extends jalview.jbgui.GDesktop
       // resolve any .lnk files in the file drop
       for (int f = 0; f < files.size(); f++)
       {
-        if (protocols.get(f).equals(DataSourceType.FILE) && files.get(f).toLowerCase().endsWith(".lnk") || files.get(f).toLowerCase().endsWith(".url")|| files.get(f).toLowerCase().endsWith(".site"))
+        String source = files.get(f).toLowerCase();
+        if (protocols.get(f).equals(DataSourceType.FILE)
+                && (source.endsWith(".lnk") || source.endsWith(".url")
+                        || source.endsWith(".site")))
         {
           try {
             File lf = new File(files.get(f));