protected static final String CONFIRM_KEYBOARD_QUIT = "CONFIRM_KEYBOARD_QUIT";
- public static HashMap<String, FileWriter> savingFiles = new HashMap<>();
+ public static HashMap<String, FileWriter> savingFiles = new HashMap<String, FileWriter>();
private JalviewChangeSupport changeSupport = new JalviewChangeSupport();
return;
}
- AlignmentViewport source = null, target = null;
+ AlignViewportI source = null;
+ AlignViewportI target = null;
if (frames[0] instanceof AlignFrame)
{
source = ((AlignFrame) frames[0]).getCurrentView();
}
// FIXME: ideally should use UI interface API
- FeatureSettings viewFeatureSettings = af.featureSettings;
+ FeatureSettings viewFeatureSettings = (af.featureSettings != null
+ && af.featureSettings.isOpen())
+ ? af.featureSettings
+ : null;
Rectangle fsBounds = af.getFeatureSettingsGeometry();
for (int i = 0; i < size; i++)
{
// transfer reference for existing feature settings to new alignFrame
if (ap == af.alignPanel)
{
- newaf.featureSettings = viewFeatureSettings;
+ if (viewFeatureSettings != null && viewFeatureSettings.fr.ap == ap)
+ {
+ newaf.featureSettings = viewFeatureSettings;
+ }
newaf.setFeatureSettingsGeometry(fsBounds);
}
addInternalFrame(newaf, af.getTitle(), AlignFrame.DEFAULT_WIDTH,
AlignFrame.DEFAULT_HEIGHT);
+ // and materialise a new feature settings dialog instance for the new alignframe
+ // (closes the old as if 'OK' was pressed)
+ if (ap == af.alignPanel && newaf.featureSettings != null
+ && newaf.featureSettings.isOpen()
+ && af.alignPanel.getAlignViewport().isShowSequenceFeatures())
+ {
+ newaf.showFeatureSettingsUI();
+ }
}
+ af.featureSettings = null;
af.alignPanels.clear();
af.closeMenuItem_actionPerformed(true);
if (gatherThis)
{
- if (af.featureSettings != null)
+ if (af.featureSettings != null && af.featureSettings.isOpen())
{
if (source.featureSettings == null)
{
}
}
}
+ // refresh the feature setting UI for the source frame if it exists
+ if (source.featureSettings != null
+ && source.featureSettings.isOpen())
+ {
+ source.showFeatureSettingsUI();
+ }
}
}
Thread t3 = null;
{
- // TODO: do rest service discovery
+ // start slivka discovery
+ t3 = new Thread(jalview.ws.slivkaws.SlivkaWSDiscoverer.getInstance());
+ t3.start();
}
if (blocking)
{