File Parsing returns Alignments, not Sequence[]

[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 7031e99..f11b1d5 100755 (executable)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -834,51 +834,6 @@ public class Desktop extends jalview.jbgui.GDesktop
 
     }
 
-    jalview.gui.VamsasClient v_client=null;
-    public void vamsasLoad_actionPerformed(ActionEvent e)
-    {
-      if (v_client==null) {
-        // Start a session.
-        JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.
-            getProperty("LAST_DIRECTORY"));
-
-        chooser.setFileView(new JalviewFileView());
-        chooser.setDialogTitle("Load Vamsas file");
-        chooser.setToolTipText("Import");
-
-        int value = chooser.showOpenDialog(this);
-
-        if (value == JalviewFileChooser.APPROVE_OPTION)
-        {
-          v_client = new jalview.gui.VamsasClient(this,
-              chooser.getSelectedFile());
-          this.vamsasLoad.setText("Session Update");
-          this.vamsasStop.setVisible(true);
-          v_client.initial_update();
-          v_client.startWatcher();
-        }
-      } else {
-        // store current data in session.
-        v_client.push_update();
-      }
-    }
-    public void vamsasStop_actionPerformed(ActionEvent e) {
-      if (v_client!=null) {
-        v_client.end_session();
-        v_client=null;
-        this.vamsasStop.setVisible(false);
-        this.vamsasLoad.setText("Start Vamsas Session...");
-      }
-    }
-    /**
-     * hide vamsas user gui bits when a vamsas document event is being handled.
-     * @param b true to hide gui, false to reveal gui
-     */
-    public void setVamsasUpdate(boolean b) {
-      jalview.bin.Cache.log.debug("Setting gui for Vamsas update "+(b ? "in progress" : "finished"));
-      vamsasLoad.setVisible(!b);
-      vamsasStop.setVisible(!b);
 
-    }
 }