JAL-2922 update FeatureRenderer and repaint feature settings after Invert Selection

[jalview.git] / src / jalview / gui / FeatureSettings.java

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 63f1b13..12f9db9 100644 (file)
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -541,13 +541,8 @@ public class FeatureSettings extends JPanel
       public void itemStateChanged(ItemEvent evt)
       {
         fr.setGroupVisibility(check.getText(), check.isSelected());
-        af.alignPanel.getSeqPanel().seqCanvas.repaint();
-        if (af.alignPanel.overviewPanel != null)
-        {
-          af.alignPanel.overviewPanel.updateOverviewImage();
-        }
-
         resetTable(new String[] { grp });
+        af.alignPanel.paintAlignment(true, true);
       }
     });
     groupPanel.add(check);
@@ -966,12 +961,13 @@ public class FeatureSettings extends JPanel
 
   public void invertSelection()
   {
-    for (int i = 0; i < table.getRowCount(); i++)
+    Object[][] data = ((FeatureTableModel) table.getModel()).getData();
+    for (int i = 0; i < data.length; i++)
     {
-      Boolean value = (Boolean) table.getValueAt(i, 2);
-
-      table.setValueAt(new Boolean(!value.booleanValue()), i, 2);
+      data[i][2] = !(Boolean) data[i][2];
     }
+    updateFeatureRenderer(data, true);
+    table.repaint();
   }
 
   public void orderByAvWidth()
@@ -1064,7 +1060,7 @@ public class FeatureSettings extends JPanel
   {
     if (fr.setFeaturePriority(data, visibleNew))
     {
-      af.alignPanel.paintAlignment(true);
+      af.alignPanel.paintAlignment(true, true);
     }
   }
 
@@ -1246,7 +1242,7 @@ public class FeatureSettings extends JPanel
         if (!inConstruction)
         {
           fr.setTransparency((100 - transparency.getValue()) / 100f);
-          af.alignPanel.paintAlignment(true);
+          af.alignPanel.paintAlignment(true,true);
         }
       }
     });