JAL-3048 amendFeatures as dialog runner - repaint after amend not always reliable

[jalview.git] / src / jalview / gui / Finder.java

diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java
index 84540f4..8b5bbda 100755 (executable)
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -223,22 +223,26 @@ public class Finder extends GFinder
     for (SearchResultMatchI match : searchResults.getResults())
     {
       seqs.add(match.getSequence().getDatasetSequence());
-      features.add(new SequenceFeature(searchString, desc,
-              match
-              .getStart(), match.getEnd(), desc));
+      features.add(new SequenceFeature(searchString, desc, match.getStart(),
+              match.getEnd(), desc));
     }
 
-    if (ap.getSeqPanel().seqCanvas.getFeatureRenderer().amendFeatures(seqs,
-            features, true, ap))
-    {
-      /*
-       * ensure feature display is turned on to show the new features,
-       * and remove them as highlighted regions
-       */
-      ap.alignFrame.showSeqFeatures.setSelected(true);
-      av.setShowSequenceFeatures(true);
-      ap.highlightSearchResults(null);
-    }
+    ap.getSeqPanel().seqCanvas.getFeatureRenderer().amendFeatures(seqs,
+            features, true, ap, new Runnable()
+            {
+              @Override
+              public void run()
+              {
+
+                /*
+                 * ensure feature display is turned on to show the new features,
+                 * and remove them as highlighted regions
+                 */
+                ap.alignFrame.showSeqFeatures.setSelected(true);
+                av.setShowSequenceFeatures(true);
+                ap.highlightSearchResults(null);
+              }
+            });
   }
 
   /**