JAL-2629 update spike branch to latest
[jalview.git] / src / jalview / gui / JDatabaseTree.java
index 207c600..1018d6e 100644 (file)
@@ -26,7 +26,6 @@ import jalview.ws.seqfetcher.DbSourceProxy;
 
 import java.awt.BorderLayout;
 import java.awt.Component;
-import java.awt.Container;
 import java.awt.Dimension;
 import java.awt.FlowLayout;
 import java.awt.GridLayout;
@@ -34,6 +33,8 @@ import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.awt.event.KeyEvent;
 import java.awt.event.KeyListener;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
 import java.util.ArrayList;
 import java.util.HashSet;
 import java.util.Hashtable;
@@ -46,6 +47,7 @@ import javax.swing.JLabel;
 import javax.swing.JPanel;
 import javax.swing.JScrollPane;
 import javax.swing.JTree;
+import javax.swing.ToolTipManager;
 import javax.swing.event.TreeSelectionEvent;
 import javax.swing.event.TreeSelectionListener;
 import javax.swing.tree.DefaultMutableTreeNode;
@@ -72,7 +74,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
       @Override
       public void actionPerformed(ActionEvent arg0)
       {
-        showDialog(null);
+        showDialog();
       }
     });
     return viewdbs;
@@ -86,20 +88,23 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
 
   private JLabel dbstatus, dbstatex;
 
+  private JPanel mainPanel = new JPanel(new BorderLayout());
+
   public JDatabaseTree(jalview.ws.SequenceFetcher sfetch)
   {
-    initDialogFrame(this, true, false, MessageManager.getString("label.select_database_retrieval_source"),
-            650, 490);
+    mainPanel.add(this);
+    initDialogFrame(mainPanel, true, false, MessageManager
+            .getString("label.select_database_retrieval_source"), 650, 490);
     /*
      * Dynamically generated database list will need a translation function from
      * internal source to externally distinct names. UNIPROT and UP_NAME are
      * identical DB sources, and should be collapsed.
      */
     DefaultMutableTreeNode tn = null, root = new DefaultMutableTreeNode();
-    Hashtable<String, DefaultMutableTreeNode> source = new Hashtable<String, DefaultMutableTreeNode>();
+    Hashtable<String, DefaultMutableTreeNode> source = new Hashtable<>();
     sfetcher = sfetch;
     String dbs[] = sfetch.getSupportedDb();
-    Hashtable<String, String> ht = new Hashtable<String, String>();
+    Hashtable<String, String> ht = new Hashtable<>();
     for (int i = 0; i < dbs.length; i++)
     {
       tn = source.get(dbs[i]);
@@ -144,19 +149,19 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     }
     // and sort the tree
     sortTreeNodes(root);
-    svp = new JScrollPane();
-    // svp.setAutoscrolls(true);
     dbviews = new JTree(new DefaultTreeModel(root, false));
     dbviews.setCellRenderer(new DbTreeRenderer(this));
 
-    dbviews.getSelectionModel().setSelectionMode(
-            TreeSelectionModel.SINGLE_TREE_SELECTION);
-    svp.getViewport().setView(dbviews);
-    // svp.getViewport().setMinimumSize(new Dimension(300,200));
-    // svp.setSize(300,250);
-    // JPanel panel=new JPanel();
-    // panel.setSize(new Dimension(350,220));
-    // panel.add(svp);
+    dbviews.getSelectionModel()
+            .setSelectionMode(TreeSelectionModel.SINGLE_TREE_SELECTION);
+    svp = new JScrollPane(dbviews);
+    svp.setMinimumSize(new Dimension(100, 200));
+    svp.setPreferredSize(new Dimension(200, 400));
+    svp.setMaximumSize(new Dimension(300, 600));
+
+    JPanel panel = new JPanel(new BorderLayout());
+    panel.setSize(new Dimension(350, 220));
+    panel.add(svp);
     dbviews.addTreeSelectionListener(new TreeSelectionListener()
     {
 
@@ -166,8 +171,21 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
         _setSelectionState();
       }
     });
-    JPanel jc = new JPanel(new BorderLayout()), j = new JPanel(
-            new FlowLayout());
+    dbviews.addMouseListener(new MouseAdapter()
+    {
+
+      @Override
+      public void mousePressed(MouseEvent e)
+      {
+        if (e.getClickCount() == 2)
+        {
+          okPressed();
+          closeDialog();
+        }
+      }
+    });
+    JPanel jc = new JPanel(new BorderLayout()),
+            j = new JPanel(new FlowLayout());
     jc.add(svp, BorderLayout.CENTER);
 
     java.awt.Font f;
@@ -183,8 +201,8 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     dbstat.add(dbstatex);
     jc.add(dbstat, BorderLayout.SOUTH);
     jc.validate();
-    // j.setPreferredSize(new Dimension(300,50));
     add(jc, BorderLayout.CENTER);
+    ok.setEnabled(false);
     j.add(ok);
     j.add(cancel);
     add(j, BorderLayout.SOUTH);
@@ -221,7 +239,8 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
       }
       else
       {
-        throw new Error(MessageManager.getString("error.implementation_error_cant_reorder_tree"));
+        throw new Error(MessageManager
+                .getString("error.implementation_error_cant_reorder_tree"));
       }
     }
     jalview.util.QuickSort.sort(names, nodes);
@@ -232,14 +251,15 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     }
   }
 
-  private class DbTreeRenderer extends DefaultTreeCellRenderer implements
-          TreeCellRenderer
+  private class DbTreeRenderer extends DefaultTreeCellRenderer
+          implements TreeCellRenderer
   {
     JDatabaseTree us;
 
     public DbTreeRenderer(JDatabaseTree me)
     {
       us = me;
+      ToolTipManager.sharedInstance().registerComponent(dbviews);
     }
 
     private Component returnLabel(String txt)
@@ -261,19 +281,23 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
         value = vl.getUserObject();
         if (value instanceof DbSourceProxy)
         {
-          val = (((DbSourceProxy) value).getDbName());
+          val = ((DbSourceProxy) value).getDbName();
+          if (((DbSourceProxy) value).getDescription() != null)
+          { // getName()
+            this.setToolTipText(((DbSourceProxy) value).getDescription());
+          }
         }
         else
         {
           if (value instanceof String)
           {
-            val = ((String) value);
+            val = (String) value;
           }
         }
       }
       if (value == null)
       {
-        val = ("");
+        val = "";
       }
       return super.getTreeCellRendererComponent(tree, val, selected,
               expanded, leaf, row, hasFocus);
@@ -298,7 +322,6 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
   protected void okPressed()
   {
     _setSelectionState();
-    closeDialog();
   }
 
   @Override
@@ -310,7 +333,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     closeDialog();
   }
 
-  private void showDialog(Container parent)
+  void showDialog()
   {
     oldselection = selection;
     oldtsel = tsel;
@@ -339,21 +362,27 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     {
       return;
     }
+    ok.setEnabled(false);
     if (dbviews.getSelectionCount() == 0)
     {
       selection = null;
     }
+
     tsel = dbviews.getSelectionPaths();
     boolean forcedFirstChild = false;
-    List<DbSourceProxy> srcs = new ArrayList<DbSourceProxy>();
+    List<DbSourceProxy> srcs = new ArrayList<>();
     if (tsel != null)
     {
       for (TreePath tp : tsel)
       {
-        DefaultMutableTreeNode admt, dmt = (DefaultMutableTreeNode) tp
-                .getLastPathComponent();
+        DefaultMutableTreeNode admt,
+                dmt = (DefaultMutableTreeNode) tp.getLastPathComponent();
         if (dmt.getUserObject() != null)
         {
+          /*
+           * enable OK button once a selection has been made
+           */
+          ok.setEnabled(true);
           if (dmt.getUserObject() instanceof DbSourceProxy)
           {
             srcs.add((DbSourceProxy) dmt.getUserObject());
@@ -362,13 +391,13 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
           {
             if (allowMultiSelections)
             {
-              srcs.addAll(sfetcher.getSourceProxy((String) dmt
-                      .getUserObject()));
+              srcs.addAll(sfetcher
+                      .getSourceProxy((String) dmt.getUserObject()));
             }
             else
             {
-              srcs.add(sfetcher
-                      .getSourceProxy((String) dmt.getUserObject()).get(0));
+              srcs.add(sfetcher.getSourceProxy((String) dmt.getUserObject())
+                      .get(0));
               forcedFirstChild = true;
             }
           }
@@ -409,34 +438,31 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
       }
     }
 
+    dbstatex.setText(" ");
     if (allowMultiSelections)
     {
       dbstatus.setText(MessageManager.formatMessage(
               "label.selected_database_to_fetch_from", new String[]
-              {
-                  Integer.valueOf(srcs.size()).toString(),
+              { Integer.valueOf(srcs.size()).toString(),
                   (srcs.size() == 1 ? "" : "s"),
-                  (srcs.size() > 0 ? " with " + x + " test quer"
-                          + (x == 1 ? "y" : "ies") : ".") }));
-      dbstatex.setText(" ");
+                  (srcs.size() > 0
+                          ? " with " + x + " test quer"
+                                  + (x == 1 ? "y" : "ies")
+                          : ".") }));
     }
     else
     {
       if (nm.length() > 0)
       {
-        dbstatus.setText(MessageManager.formatMessage(
-                "label.database_param", new String[]
+        dbstatus.setText(MessageManager
+                .formatMessage("label.database_param", new String[]
                 { nm }));
         if (qr.length() > 0)
         {
-          dbstatex.setText(MessageManager.formatMessage(
-                  "label.example_param", new String[]
+          dbstatex.setText(MessageManager
+                  .formatMessage("label.example_param", new String[]
                   { qr }));
         }
-        else
-        {
-          dbstatex.setText(" ");
-        }
       }
       else
       {
@@ -463,7 +489,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
       return null;
     }
     StringBuffer sb = new StringBuffer();
-    HashSet<String> hs = new HashSet<String>();
+    HashSet<String> hs = new HashSet<>();
     for (DbSourceProxy dbs : getSelectedSources())
     {
       String tq = dbs.getTestQuery();
@@ -480,7 +506,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     return sb.toString();
   }
 
-  List<ActionListener> lstners = new Vector<ActionListener>();
+  List<ActionListener> lstners = new Vector<>();
 
   public void addActionListener(ActionListener actionListener)
   {
@@ -548,6 +574,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     {
       action = arg0.getKeyCode();
       okPressed();
+      closeDialog();
     }
     if (!arg0.isConsumed() && arg0.getKeyChar() == KeyEvent.VK_ESCAPE)
     {
@@ -569,4 +596,11 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     // TODO Auto-generated method stub
 
   }
+
+  @Override
+  public void setVisible(boolean arg0)
+  {
+    System.out.println("setVisible: " + arg0);
+    super.setVisible(arg0);
+  }
 }