JAL-1483 move show sequence feature and sequence feature height settings to view...

[jalview.git] / src / jalview / gui / Jalview2XML.java

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 8cad9ca..3ab5a8d 100644 (file)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1064,7 +1064,7 @@ public class Jalview2XML
       view.setShowColourText(av.getColourText());
       view.setShowFullId(av.getShowJVSuffix());
       view.setRightAlignIds(av.rightAlignIds);
-      view.setShowSequenceFeatures(av.showSequenceFeatures);
+      view.setShowSequenceFeatures(av.isShowSequenceFeatures());
       view.setShowText(av.getShowText());
       view.setShowUnconserved(av.getShowUnconserved());
       view.setWrapAlignment(av.getWrapAlignment());
@@ -3432,10 +3432,8 @@ public class Jalview2XML
 
     af.viewport.setColourAppliesToAllGroups(true);
 
-    if (view.getShowSequenceFeatures())
-    {
-      af.viewport.showSequenceFeatures = true;
-    }
+    af.viewport.setShowSequenceFeatures(view.getShowSequenceFeatures());
+
     if (view.hasCentreColumnLabels())
     {
       af.viewport.setCentreColumnLabels(view.getCentreColumnLabels());