patched for JAL-531 - only display full symbol distribution stats on tooltip/annotati...

[jalview.git] / src / jalview / gui / Jalview2XML.java

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index c59a125..af8b2c0 100755 (executable)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -2245,7 +2245,7 @@ public class Jalview2XML
         ;
         if (groups[i].hasShowSequenceLogo())
         {
-          sg.setIncludeAllConsSymbols(groups[i].isShowSequenceLogo());
+          sg.setshowSequenceLogo(groups[i].isShowSequenceLogo());
         }
         if (groups[i].hasIgnoreGapsinConsensus())
         {
@@ -2948,8 +2948,6 @@ public class Jalview2XML
     }
 
     af.setMenusFromViewport(af.viewport);
-    // This is done twice - why ?
-    af.alignPanel.updateAnnotation(false); // recompute any autoannotation
     // TODO: we don't need to do this if the viewport is aready visible.
     Desktop.addInternalFrame(af, view.getTitle(), view.getWidth(), view
             .getHeight());