JAL-2371 rename global/viewportColourScheme to residueShading

[jalview.git] / src / jalview / gui / Jalview2XML_V1.java

diff --git a/src/jalview/gui/Jalview2XML_V1.java b/src/jalview/gui/Jalview2XML_V1.java
index 7472877..e751a2c 100755 (executable)
--- a/src/jalview/gui/Jalview2XML_V1.java
+++ b/src/jalview/gui/Jalview2XML_V1.java
@@ -405,16 +405,16 @@ public class Jalview2XML_V1
       // }
     }
 
-    af.viewport.getViewportColourScheme().setThreshold(
+    af.viewport.getResidueShading().setThreshold(
             view.getPidThreshold(), true);
-    af.viewport.getViewportColourScheme().setConsensus(
+    af.viewport.getResidueShading().setConsensus(
             af.viewport.getSequenceConsensusHash());
     af.viewport.setColourAppliesToAllGroups(false);
     af.alignPanel.updateLayout();
     af.changeColour(cs);
     if (view.getConservationSelected() && cs != null)
     {
-      af.viewport.getViewportColourScheme().setConservationInc(
+      af.viewport.getResidueShading().setConservationInc(
               view.getConsThreshold());
     }