af.viewport.setStartSeq(view.getStartSeq());\r
af.viewport.setShowAnnotation(view.getShowAnnotation());\r
af.viewport.setAbovePIDThreshold(view.getPidSelected());\r
- af.abovePIDThreshold.setSelected(view.getPidSelected());\r
af.viewport.setColourText(view.getShowColourText());\r
- af.colourTextMenuItem.setSelected(view.getShowColourText());\r
af.viewport.setConservationSelected(view.getConservationSelected());\r
- af.conservationMenuItem.setSelected(view.getConservationSelected());\r
-\r
af.viewport.setShowJVSuffix(view.getShowFullId());\r
- af.seqLimits.setSelected(view.getShowFullId());\r
-\r
af.viewport.setFont(new java.awt.Font(view.getFontName(),\r
view.getFontStyle(), view.getFontSize()));\r
af.alignPanel.fontChanged();\r
\r
af.viewport.setRenderGaps(view.getRenderGaps());\r
- af.renderGapsMenuItem.setSelected(view.getRenderGaps());\r
-\r
af.viewport.setWrapAlignment(view.getWrapAlignment());\r
- af.wrapMenuItem.setSelected(view.getWrapAlignment());\r
-\r
-\r
af.alignPanel.setWrapAlignment(view.getWrapAlignment());\r
-\r
- af.annotationPanelMenuItem.setState(view.getShowAnnotation());\r
af.viewport.setShowAnnotation(view.getShowAnnotation());\r
af.alignPanel.setAnnotationVisible(view.getShowAnnotation());\r
-\r
-\r
af.viewport.setShowBoxes(view.getShowBoxes());\r
- af.viewBoxesMenuItem.setSelected(view.getShowBoxes());\r
af.viewport.setShowText(view.getShowText());\r
- af.viewTextMenuItem.setSelected(view.getShowText());\r
\r
ColourSchemeI cs = null;\r
\r
}\r
}\r
\r
- af.setColourSelected(view.getBgColour());\r
af.viewport.setGlobalColourScheme(cs);\r
af.viewport.setColourAppliesToAllGroups(false);\r
af.changeColour(cs);\r
}\r
\r
af.viewport.setColourAppliesToAllGroups(true);\r
+ af.viewport.showSequenceFeatures = view.getShowSequenceFeatures();\r
\r
- if (view.getShowSequenceFeatures())\r
- {\r
- af.viewport.showSequenceFeatures = true;\r
- af.showSeqFeatures.setSelected(true);\r
- }\r
\r
if(jms.getFeatureSettings()!=null)\r
{\r
af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().renderOrder = renderOrder;\r
}\r
\r
+ af.setMenusFromViewport(af.viewport);\r
\r
Desktop.addInternalFrame(af, view.getTitle(),\r
view.getWidth(), view.getHeight());\r