package jalview.gui;
import jalview.api.AlignViewportI;
+import jalview.bin.Cache;
import jalview.renderer.OverviewRenderer;
+import jalview.renderer.OverviewResColourFinder;
import jalview.viewmodel.OverviewDimensions;
import java.awt.Color;
private OverviewDimensions od;
+ private OverviewRenderer or = null;
+
private AlignViewportI av;
public OverviewCanvas(OverviewDimensions overviewDims,
sr = new SequenceRenderer(av);
sr.renderGaps = false;
- sr.forOverview = true;
fr = new jalview.renderer.seqfeatures.FeatureRenderer(av);
}
if (updaterunning)
{
restart = true;
+ if (or != null)
+ {
+ or.setRedraw(true);
+ }
}
else
{
setPreferredSize(new Dimension(od.getWidth(), od.getHeight()));
- OverviewRenderer or = new OverviewRenderer(sr, fr, od);
+ boolean useLegacy = Cache.getDefault("USE_LEGACY_GAP", false);
+ Color gapCol = Cache.getDefaultColour("GAP_COLOUR", Color.lightGray);
+ Color hiddenCol = Cache.getDefaultColour("HIDDEN_COLOUR", Color.DARK_GRAY.darker());
+ OverviewResColourFinder cf = new OverviewResColourFinder(useLegacy,
+ gapCol, hiddenCol);
+
+ or = new OverviewRenderer(fr, od, av.getAlignment(),
+ av.getResidueShading(), cf);
miniMe = or.draw(od.getRows(av.getAlignment()),
- od.getColumns(av.getAlignment().getHiddenColumns()));
+ od.getColumns(av.getAlignment()));
Graphics mg = miniMe.getGraphics();
mg.translate(0, od.getSequencesHeight());
or.drawGraph(mg, av.getAlignmentConservationAnnotation(),
av.getCharWidth(), od.getGraphHeight(),
- od.getColumns(av.getAlignment().getHiddenColumns()));
+ od.getColumns(av.getAlignment()));
mg.translate(0, -od.getSequencesHeight());
}
System.gc();