JAL-1713 update from Jalview 2.11.3 develop

[jalview.git] / src / jalview / gui / OverviewPanel.java

diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java
index adde919..872d142 100755 (executable)
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -20,18 +20,10 @@
  */
 package jalview.gui;
 
-import jalview.bin.Cache;
-import jalview.renderer.OverviewRenderer;
-import jalview.util.MessageManager;
-import jalview.util.Platform;
-import jalview.viewmodel.OverviewDimensions;
-import jalview.viewmodel.OverviewDimensionsHideHidden;
-import jalview.viewmodel.OverviewDimensionsShowHidden;
-import jalview.viewmodel.ViewportListenerI;
-
 import java.awt.BorderLayout;
 import java.awt.Cursor;
 import java.awt.Dimension;
+import java.awt.Rectangle;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.awt.event.ComponentAdapter;
@@ -48,6 +40,14 @@ import javax.swing.JPanel;
 import javax.swing.JPopupMenu;
 import javax.swing.SwingUtilities;
 
+import jalview.renderer.OverviewRenderer;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+import jalview.viewmodel.OverviewDimensions;
+import jalview.viewmodel.OverviewDimensionsHideHidden;
+import jalview.viewmodel.OverviewDimensionsShowHidden;
+import jalview.viewmodel.ViewportListenerI;
+
 /**
  * Panel displaying an overview of the full alignment, with an interactive box
  * representing the viewport onto the alignment.
@@ -67,6 +67,8 @@ public class OverviewPanel extends JPanel
 
   private AlignmentPanel ap;
 
+  private JInternalFrame internalFrame;
+
   protected JCheckBoxMenuItem displayToggle;
 
   protected boolean showHidden = true;
@@ -80,14 +82,18 @@ public class OverviewPanel extends JPanel
    * 
    * @param alPanel
    *          The alignment panel which is shown in the overview panel
+   * @param frame
+   * @param isShowHidden
+   *          TODO
    */
-  public OverviewPanel(AlignmentPanel alPanel)
+  public OverviewPanel(AlignmentPanel alPanel, JInternalFrame frame,
+          boolean isShowHidden)
   {
     this.av = alPanel.av;
     this.ap = alPanel;
+    this.internalFrame = frame;
 
-    showHidden = Cache.getDefault(Preferences.SHOW_OV_HIDDEN_AT_START,
-            false);
+    showHidden = isShowHidden;
     if (showHidden)
     {
       od = new OverviewDimensionsShowHidden(av.getRanges(),
@@ -420,6 +426,68 @@ public class OverviewPanel extends JPanel
       oviewCanvas = null;
       ap = null;
       od = null;
+      internalFrame = null;
     }
   }
+
+  public boolean isShowHiddenRegions()
+  {
+    return showHidden;
+  }
+
+  public OverviewCanvas getCanvas()
+  {
+    return oviewCanvas;
+  }
+
+  /**
+   * Sets the title of the enclosing frame
+   * 
+   * @param title
+   */
+  public void setTitle(String title)
+  {
+    internalFrame.setTitle(title);
+  }
+
+  /**
+   * Returns the title of the enclosing frame
+   * 
+   * @return title
+   */
+  public String getTitle()
+  {
+    return internalFrame.getTitle();
+  }
+
+  /**
+   * Sets the bounds of the frame holding the Overview panel
+   * 
+   * @param xpos
+   * @param ypos
+   * @param width
+   * @param height
+   */
+  public void setFrameBounds(int xpos, int ypos, int width, int height)
+  {
+    internalFrame.setBounds(xpos, ypos, width, height);
+  }
+
+  /**
+   * Returns the bounds of the enclosing frame
+   * 
+   * @return
+   */
+  public Rectangle getFrameBounds()
+  {
+    return internalFrame.getBounds();
+  }
+
+  /**
+   * Closes the frame containing the overview panel
+   */
+  public void close()
+  {
+    internalFrame.dispose();
+  }
 }