Merge branch 'Jalview-JS/develop' into merge_js_develop

[jalview.git] / src / jalview / gui / PCAPanel.java

diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java
index d1e7565..c0d57a6 100644 (file)
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -36,6 +36,7 @@ import jalview.jbgui.GPCAPanel;
 import jalview.math.RotatableMatrix.Axis;
 import jalview.util.ImageMaker;
 import jalview.util.MessageManager;
+import jalview.util.Platform;
 import jalview.viewmodel.AlignmentViewport;
 import jalview.viewmodel.PCAModel;
 
@@ -200,10 +201,7 @@ public class PCAPanel extends GPCAPanel
     repaint();
     if (getParent() == null)
     {
-      Desktop.addInternalFrame(this,
-              MessageManager.formatMessage("label.calc_title", "PCA",
-                      getPcaModel().getScoreModelName()),
-              475, 450);
+      addToDesktop(this, getPcaModel().getScoreModelName());
       this.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
     }
     working = false;
@@ -572,11 +570,11 @@ public class PCAPanel extends GPCAPanel
     // }
     //
     // JPanel progressPanel;
-    // Long lId = new Long(id);
+    // Long lId = Long.valueOf(id);
     // GridLayout layout = (GridLayout) statusPanel.getLayout();
     // if (progressBars.get(lId) != null)
     // {
-    // progressPanel = (JPanel) progressBars.get(new Long(id));
+    // progressPanel = (JPanel) progressBars.get(Long.valueOf(id));
     // statusPanel.remove(progressPanel);
     // progressBars.remove(lId);
     // progressPanel = null;
@@ -609,19 +607,25 @@ public class PCAPanel extends GPCAPanel
     // // setMenusForViewport();
     // validate();
   }
+  
+  @Override
+  public void removeProgressBar(long id)
+  {
+    progressBar.removeProgressBar(id);
+  }
 
   @Override
   public void registerHandler(final long id,
           final IProgressIndicatorHandler handler)
   {
     progressBar.registerHandler(id, handler);
-    // if (progressBarHandlers == null || !progressBars.contains(new Long(id)))
+    // if (progressBarHandlers == null || !progressBars.contains(Long.valueOf(id)))
     // {
     // throw new
     // Error(MessageManager.getString("error.call_setprogressbar_before_registering_handler"));
     // }
-    // progressBarHandlers.put(new Long(id), handler);
-    // final JPanel progressPanel = (JPanel) progressBars.get(new Long(id));
+    // progressBarHandlers.put(Long.valueOf(id), handler);
+    // final JPanel progressPanel = (JPanel) progressBars.get(Long.valueOf(id));
     // if (handler.canCancel())
     // {
     // JButton cancel = new JButton(
@@ -762,4 +766,12 @@ public class PCAPanel extends GPCAPanel
     getRotatableCanvas().ap = panel;
     PaintRefresher.Register(PCAPanel.this, panel.av.getSequenceSetId());
   }
+
+  public static void addToDesktop(PCAPanel panel, String modelName)
+  {
+    Dimension dim = Platform.getDimIfEmbedded(panel, 475, 450);
+    Desktop.addInternalFrame(panel, MessageManager.formatMessage(
+            "label.calc_title", "PCA", modelName), dim.width,
+            dim.height);
+  }
 }